Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01019 ATGAGTCTCCTTCAAATTCAATCCTCTCCTCATAACCAAACCCTCCTTTCTCTCTCTTTCTCATCTTCCCTCTCCCATTCCTCCTCACTCCACTTCAACCACTCTTCTTCTTCCTCCACCACTCTCACCCATGCTCACACGTGCTTCCACCCTCGCCTCTCGGTGGTCACGTGCTCCATCTCCAACATCCACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATCGTGCGCTGGAACGACGTCTACCGCAGGATATCTCTCAACCAAAACCCCCAAGTGGGGTCCGCAGAGGTGCTCAACCAGTGGGAGAACGAAGGGAGGCACCTCACGAAGTGGGAGCTTTCAAGAGTCGTTAAAGAGTTGAGGAAGTACAAGAGATTTCCAAGAGCCCTCGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCCGAGAGTGATGCAGCAATTCAGTTAGATTTAATTGCAAAAGTTCGTGGAGTTTCTAGTGCAGAAGCATTCTTTCTGAGTCTGGAAGATAAGTTAAAAGATAAGAGGACTTATGGTGCCCTGTTGAATGTATACGTGCATTCTAGATCGAAGGAGAAGGCAGAATCTTTATTTGATACTATGAGGAGTAAAGGGTATGTAATACATGCCCTACCAATTAATGTAATGATGACTCTGTACATGAACCTTAATGAATATGCTAAAGTTGATATGCTGGCTTCTGAAATGATGGAAAAGAACATTCAGCTAGACATCTATACATATAATATCTGGTTATCTTCGTGTGGATCTCAAGGATCAGTCGAAAAGATGGAACAAGTGTTTGAACAAATGGAAAGGGATCCTACCATTGTCCCTAACTGGTCTACATTCAGCACATTGGCTTCGATGTACATTAGGATGAATCAGAATGAAAAGGCAGAAAAGTGCTTAAGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGAAGTGTTGGAAAGAAAGACGAAGTCTATCGTGTGTGGAATACTTACAAATCAATTTTTCCAAGAATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATCGAGGGTGCAGAAAAACTATATGAGGAATGGATTTCAGTAAAGTCAAGTTATGATCCTAGAATTGGAAACCTTCTCATGGGCTGGTATGTTAAGAAAGATGACACAGATAAAGCTTTGAGTTTCTTTGAGCAGATATCAAATGATGGCTGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAAGCCCTGTCCTGCTTGAAAGAAGCATTTATGGTTGCTGGTGGTTCAAAGAGTTGGAGACCAAAGCCCTCATACTTGTCTGCATTCCTTGAGCTTTGTCAGGAGCAAAATGACATGGAAAGTGCTGAGGTTTTAATTGGACTGCTGAGGCAGTCAAAATTTAGTAAAATTAAAGTTTATGCATCTATCATTGGCTCACCTGATTGTACCATTGACAATGGTGAATTGCAAAGCAAGATTGATATAACTGATAGAACTGATGATGCTGTTGACAGTGAAAACATGGATGATGACTCTCAAATGTTGTTGAACCAACTAGATAGTAGATTTTGA 1668 0.4161 MSLLQIQSSPHNQTLLSLSFSSSLSHSSSLHFNHSSSSSTTLTHAHTCFHPRLSVVTCSISNIHSYGTVDYERRPIVRWNDVYRRISLNQNPQVGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFPRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPRIGNLLMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISEALSCLKEAFMVAGGSKSWRPKPSYLSAFLELCQEQNDMESAEVLIGLLRQSKFSKIKVYASIIGSPDCTIDNGELQSKIDITDRTDDAVDSENMDDDSQMLLNQLDSRF 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01019 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Gma03g01019 555 PANTHER OS12G0527900 PROTEIN 46 511 - -
Gma03g01019 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 281 IPR002885 -
Gma03g01019 555 SUPERFAMILY TPR-like 76 403 IPR011990 GO:0005515
Gma03g01019 555 Pfam Pentatricopeptide repeat domain 240 298 IPR002885 -
Gma03g01019 555 Gene3D Tetratricopeptide repeat domain 111 356 IPR011990 GO:0005515
Gma03g01019 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Gma03g01019 555 Gene3D Tetratricopeptide repeat domain 359 515 IPR011990 GO:0005515
Gma03g01019 555 TIGRFAM PPR: pentatricopeptide repeat domain 184 214 IPR002885 -
Gma03g01019 555 TIGRFAM PPR: pentatricopeptide repeat domain 397 427 IPR002885 -
Gma03g01019 555 TIGRFAM PPR: pentatricopeptide repeat domain 253 287 IPR002885 -
Gma03g01019 555 Pfam PPR repeat 361 385 IPR002885 -
Gma03g01019 555 Pfam PPR repeat 397 424 IPR002885 -
Gma03g01019 555 Pfam PPR repeat 184 212 IPR002885 -
Gma03g01019 555 PANTHER OSJNBB0038F03.9 PROTEIN 46 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01019 Gma-Chr3 34205133 34209135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01019 37 523 EF-hand Containing Proteins AT1G02150 59.960 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01019 - - gmx:100780408 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01019 03 34205133 34209135 Gma03g01019 03 34205133 34209135 ECH