Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01931 ATGTACAGCGCGCGTCCCACCAACGCGGCGACGCGTCCATGCTTCAAATTTTCTTCTGAAATTCAATCCTTCGTTTCACCCTCTCTCTCTCTCCATCCTCATTCGTTCCTTCTAAATCCCGCCACGCGCCACACTCTCTCACTCTCCACGCGACAAAACCACGCGCCTCCCTTGCCGCCGCCGCAACGTTTGGATTACACCCCTCCCAACGAGACGCGTCTGAACAGCTTCTACCTCAAGCGCGGGAAACTCGAGTTTGCACGCCAAGTGTTTGATAAAAGTCCCAAACGAGACGTTAATGCATGGAGGTGGAGTACCATTATTACCCGTTTCGCGCGCAATGGAATGATAAAAGAAGTTTTGGGGTATACGAGGTCGATGTTGGTAGAAGGAATAAATCCAAGTTTGGTTTTAATGACTGTCATTCTTGATGTTATAGGGAAAGCTGGTGCACGAAACTTGGGTAGAGAAGCTCATGGTTTTGTGGTGAAGAATATGTATTTCAAGGAATTGTCGATTCTATCCGCATTGATCGATATGTATCATAAGTGTGGCGATGTTGGGTCGGGGAATCGAGTTTTGTTTAGTGTGATGAAGTGGAAAGGAGATTTTTGGATTGGATTGGTTTCGGGGAGACTTGAGGTTGAAATGAGGTCTGTGATTCGGTTGAAGAGGTTCCGACCTGGTGCTGGTGCGGTTGCCTCTTTACTTCCCATCTGTGCACAGTTGAGGGCTCTGAAGCAAGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGGCTTTTGCCTAATGTGCAGATAGTCTCTTCTTTGATGGTGTTGTACTCTAAGTGCGGTGAGATTGAGTATTCCATTAAACTTTTTGATCAAATGGAGTTGAAGAATGTGGTTTCTTGGACTACCATGATTGATTCATGCATTGAGAATGGGGGTATGTGTGAAGCCCTTGGTGTCATGAGGTCAATGACATGGAGGACCGAGCATAAGCCGGATACTGTCACCATGGCTAGGATGCTACATGTGTGTGGGGAGCTGAAAACTTTAAAGCTTGGGAAGGAAGTTCATGGACAAGTGTTGAAAAGTGGTTTTGCATCAGTCTATTATGTTGCTGCTGGACTCATTGATATGTATGGGATTTGTGGAGATGTTGATAAAGCAAAGTTGGTATTCAGTGTGGTTCCTGATGAAGGTTCAATGGCATGGAGTGCTCTTATAAGGGCCTATGGGCATAAGGAATGGTATCAGGAGGCAGTTGATCTTTTTGATGACATGATTTCAAATGGTTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTCTATCTATATGTGATAGGGCTGGATATGTTGAAGATTCTTTTAGGATCTTTGATTTGATGTCAAGATATAAAATTGAAGCATCCAAAGAACACTGCACTTGCATGATTCGACTCCTTACCCGCTATGGTAAACTAGATGAGGCTCTAAGATATTTAGAAATGAGTTCTTCCTTATAG 1494 0.4444 MYSARPTNAATRPCFKFSSEIQSFVSPSLSLHPHSFLLNPATRHTLSLSTRQNHAPPLPPPQRLDYTPPNETRLNSFYLKRGKLEFARQVFDKSPKRDVNAWRWSTIITRFARNGMIKEVLGYTRSMLVEGINPSLVLMTVILDVIGKAGARNLGREAHGFVVKNMYFKELSILSALIDMYHKCGDVGSGNRVLFSVMKWKGDFWIGLVSGRLEVEMRSVIRLKRFRPGAGAVASLLPICAQLRALKQGKEIHAYALRHWLLPNVQIVSSLMVLYSKCGEIEYSIKLFDQMELKNVVSWTTMIDSCIENGGMCEALGVMRSMTWRTEHKPDTVTMARMLHVCGELKTLKLGKEVHGQVLKSGFASVYYVAAGLIDMYGICGDVDKAKLVFSVVPDEGSMAWSALIRAYGHKEWYQEAVDLFDDMISNGCSPNRFTFEAVLSICDRAGYVEDSFRIFDLMSRYKIEASKEHCTCMIRLLTRYGKLDEALRYLEMSSSL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01931 497 Pfam PPR repeat family 399 441 IPR002885 -
Phco1g01931 497 Gene3D Tetratricopeptide repeat domain 371 496 IPR011990 GO:0005515
Phco1g01931 497 Gene3D Tetratricopeptide repeat domain 71 217 IPR011990 GO:0005515
Phco1g01931 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 134 IPR002885 -
Phco1g01931 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Phco1g01931 497 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 65 491 IPR046960 GO:0003723|GO:0009451
Phco1g01931 497 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 350 450 - -
Phco1g01931 497 NCBIfam pentatricopeptide repeat 400 432 IPR002885 -
Phco1g01931 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Phco1g01931 497 Pfam PPR repeat 297 323 IPR002885 -
Phco1g01931 497 Pfam PPR repeat 269 295 IPR002885 -
Phco1g01931 497 Pfam PPR repeat 471 492 IPR002885 -
Phco1g01931 497 Pfam PPR repeat 104 132 IPR002885 -
Phco1g01931 497 Gene3D Tetratricopeptide repeat domain 218 370 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01931 Phco-Chr1 58954347 58955840 Dispersed/Wgd