Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0475 ATGGTTACAACCAATTCCTACCTCTTTAGTGCTCCTTCTTCTCTGCTTCCAATCTCAATTCATAAGTTTCCAAACTCTAGTAAGCACCACTCCCCCACTTTGGCATTCACTCAACTTAAACCAAAACCAAAACCAAATGTGTCTTCCATCAAACAACACATCAACCTCAATGAAACACAACAACTCCAAGGTCACTTCATGAAAACCAATTTCAATTTGAGTTGTAGACTCCCTTTTGCAGCATTAGAATATTATTCTAGCAATGCAGCAATTCATAGCTTCCTAATTACATCTTACATAAAAAACAACTGCCCTGCAGATGCCGCAAAAATGTATGCCTACATGCGTAGAACAGACACTGAAGTTGACAATTTTATCATACCCTCGGACAAAAGTTGCAGCTTTGTAATGAAAAATAGATTTCATGGGGATGTTTTTGTGTGTAATGCTTTGATCATGATGTACGGTGAGGTTGGAAGCTTGACATCGACACGACTGTTATTTGATAAGATTGAAAATAAAGATAGTACTATGATTAGAAGCTATGATAGGGGTGGTTTGTTTAATGAAGCATTGAACCTTTTTAGCGATATGCTTGTTATGGGAATGAGGCCTAGTGAAATTGCAATGATAAACATCACACATGTCTTGGCAGAATTTGCTGATTTGAAAATGGGGAAAGTCGTGCTTGGTTATGTAATAAGGAATGTGAAGTATGGAAAATCAGGAGCTTTTCTAAGCCCAGGTTTGATTGATATGTATGTTAAATGTGGAAATTTAGCTTGTGCAACAAGACTTTTTGATGGCTTGTATGAGGCTAGTATCATTTCATGGACTGCTATGATTGCAAGCAACATTTATTGCTATAATTTGAATGAAGGTGTAAGACTCTTCATCAAAATGCTTGGAGAGGGTATGTTTCGAAATGAGATTACAATCCTTAGTTTGGTCAAAGAATGCGGCACAGTAGGAGCTCTAGAACTAGGAAAATGGGTGCATGCTTTCACATTAAGAAGTGGATTTACAATGTCTTTGGTTCTGGCCACTGCTTTTATTGACATGTATGGAAAATATGGTGATGCTAGAATTGCAAGATCTATATTTAGCAACTTCAAGAGCAAAGATTTTATGATGTGGAGTGCCATGATTTCAGCTTATGCACGAAACAATTGTATAGATGAAGCCTTTGATATCTTTATAACCATGGTTAGTCTCCTTAGGATATGTGCAAAAGATGGATCACTTGAAAAGGGGAAGTGGATCCATTCTTACATAGACAATCAAGGAATTCAAGAAGACATGATTCTTAGAACATCTTTGGTGAACATGTATGCCAAATGTGGAGACATAGACGTAGCTCATAGATTGTTTGATGCAGCAATGGACCGCGAAATTTCAATGTGGAATGCCATGATATCTGGTTTTGCAATGCATGGTCATGGTGAGGTAGCATTTAAACTCTTTGAAGAAATGGAAGCACTAGGGGTTGTCCCTAATGACATTACATTCATTGGAGCTCTTTATGCTTGTAGTCACCCAGGATTGTTGAATGAAGGGAGGAGGCTGTTTCACAAAATGGTTCATGAATTTGGGGTTGTCCCAAAAGTTGAGCACTATGGTTGTATGGTGGATCTTCTTGGTAGAGCTGGAATGCTTGATGAGGTAAATGAACTAATTAAAAACATGCCTATGAGGCCAAACATGGTTGTGTTTGGATCTCTTCTTTCTGCCTGCAAGCTTCACAAAAATCTCAAACTAGAAGAATGGACAACAAAACAATTTCTATCATTGGAACACTACAAAAGTATGAAGGATAAGGGAATTGTTAAAGTAACAGGTGTTAGTTCCATTGAAGTGAATGAGTCACTTCATGAATTCACAATTGGAGATAGAGATCACCCAGATGCTGAAAAAATTTATGAAATGATTGATGAGATGAGAGAAAAACTGGAAGATGTTGGATACATCCCATATGTATCTTGTGTTCTGATGAACTTGGATAATGAGGAGAAAGAAACTGCACTTAACTATCACAATGAAAAACTGGTAATGGCATATGGATTGATTAACACTGCTCCTGGTGTTCCAATTAGAATTGTGAAGAATCTTAGAATTTGTGATGATTGCCACAATGCAACCAAGTTGCTTTCCAAGATGTATGGGTGGGAGATCATTATGAGGGATCAAAATCGTTTTCATCACTTTCAAGAAGGATCTTGTTCTTGTTGTGATTATTGGTAG 2241 0.3739 MVTTNSYLFSAPSSLLPISIHKFPNSSKHHSPTLAFTQLKPKPKPNVSSIKQHINLNETQQLQGHFMKTNFNLSCRLPFAALEYYSSNAAIHSFLITSYIKNNCPADAAKMYAYMRRTDTEVDNFIIPSDKSCSFVMKNRFHGDVFVCNALIMMYGEVGSLTSTRLLFDKIENKDSTMIRSYDRGGLFNEALNLFSDMLVMGMRPSEIAMINITHVLAEFADLKMGKVVLGYVIRNVKYGKSGAFLSPGLIDMYVKCGNLACATRLFDGLYEASIISWTAMIASNIYCYNLNEGVRLFIKMLGEGMFRNEITILSLVKECGTVGALELGKWVHAFTLRSGFTMSLVLATAFIDMYGKYGDARIARSIFSNFKSKDFMMWSAMISAYARNNCIDEAFDIFITMVSLLRICAKDGSLEKGKWIHSYIDNQGIQEDMILRTSLVNMYAKCGDIDVAHRLFDAAMDREISMWNAMISGFAMHGHGEVAFKLFEEMEALGVVPNDITFIGALYACSHPGLLNEGRRLFHKMVHEFGVVPKVEHYGCMVDLLGRAGMLDEVNELIKNMPMRPNMVVFGSLLSACKLHKNLKLEEWTTKQFLSLEHYKSMKDKGIVKVTGVSSIEVNESLHEFTIGDRDHPDAEKIYEMIDEMREKLEDVGYIPYVSCVLMNLDNEEKETALNYHNEKLVMAYGLINTAPGVPIRIVKNLRICDDCHNATKLLSKMYGWEIIMRDQNRFHHFQEGSCSCCDYW* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0475 746 Pfam PPR repeat family 466 505 IPR002885 -
Pvu10g0475 746 Pfam DYW family of nucleic acid deaminases 654 746 IPR032867 GO:0008270
Pvu10g0475 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 405 IPR002885 -
Pvu10g0475 746 Pfam PPR repeat 176 202 IPR002885 -
Pvu10g0475 746 Pfam PPR repeat 438 458 IPR002885 -
Pvu10g0475 746 Pfam PPR repeat 538 563 IPR002885 -
Pvu10g0475 746 Pfam PPR repeat 378 404 IPR002885 -
Pvu10g0475 746 PANTHER - 78 329 - -
Pvu10g0475 746 PANTHER - 244 402 - -
Pvu10g0475 746 PANTHER - 289 619 - -
Pvu10g0475 746 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Pvu10g0475 746 TIGRFAM PPR: pentatricopeptide repeat domain 467 499 IPR002885 -
Pvu10g0475 746 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Pvu10g0475 746 TIGRFAM PPR: pentatricopeptide repeat domain 378 403 IPR002885 -
Pvu10g0475 746 Gene3D Tetratricopeptide repeat domain 245 339 IPR011990 GO:0005515
Pvu10g0475 746 Gene3D Tetratricopeptide repeat domain 400 678 IPR011990 GO:0005515
Pvu10g0475 746 Gene3D Tetratricopeptide repeat domain 46 244 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0475 Pvu-Chr10 6939602 6942032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0475 135 746 Glycoside Hydrolase AT3G49170 33.883 2.30e-119 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0475 - - pvu:PHAVU_010G045800g 1518.44