Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03356 ATGGAACAAGTATTTGAACAAATGTCAAAGGATCCTACCATTATGCCTAACTGGAGCACATTTAGTACAATGGCTGCAATGTACATTAAGATGGAATTGTTTGACAAAGCCGAAGAGTGCTTAAAAAAAGTTGAGGGTAGAATATTAGGTCGAGATAGAGTACCTTTTCATTATCTCCTTAGTTTGTATGGAAGTGTTGGAAACAAGGACGAAGTTTATCGTGTGTGGAATACCTATAAATCAATGTTTCCGAGTATACCAAACTTGGGATACCATGCTGCTATCTCTTCTCTAGTCAGAATGGACGATATTGAGGGTGCAGGAAAGCTTTATGAAGAATGGGTCTCTGTAAGGCCGTCTGATGATTCTAGAATAGGAAACCTTCTCATATGTTGGTATCTTAAGAAGGGAAAATTCGATAAAGTTTTGAGTTTCTTTGAGCATATGACTAAGGGTGGTGGATGCCCGAATGCAACTACATGGGAGCTTCTTTCTGAGTGTCATATCGCTGAAAAGAGGGTTTCGGACGCACTGTCCTGCTTGAAGAAAGCTTTTATGACTAGTGGTTCAAAGAGTTGGAAACCAAAGCCAATAAAATTGTTGGCATTCTTTAAGCTTTGTCGAGACCAAGACAATATGGAGAGCGCTGAGGTTTTAATTGAGTTGTTGAAGAAATCAGGATACGATAAAGATGAAGCGTTTGCGTCACTCATTGGTGAAGATGAATTGTCAAACAGGATGGAAACAGTTGATAGAACTGATGATATTGTTGACAATGAAAACATGGATGATGATGACTCTCATGTGTTGTTCAACCAAGTAGAGAGTAACTTTTGA 837 0.3883 MEQVFEQMSKDPTIMPNWSTFSTMAAMYIKMELFDKAEECLKKVEGRILGRDRVPFHYLLSLYGSVGNKDEVYRVWNTYKSMFPSIPNLGYHAAISSLVRMDDIEGAGKLYEEWVSVRPSDDSRIGNLLICWYLKKGKFDKVLSFFEHMTKGGGCPNATTWELLSECHIAEKRVSDALSCLKKAFMTSGSKSWKPKPIKLLAFFKLCRDQDNMESAEVLIELLKKSGYDKDEAFASLIGEDELSNRMETVDRTDDIVDNENMDDDDSHVLFNQVESNF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03356 278 Gene3D Tetratricopeptide repeat domain 89 262 IPR011990 GO:0005515
Car07g03356 278 PANTHER OS12G0527900 PROTEIN 1 240 - -
Car07g03356 278 SUPERFAMILY TPR-like 21 185 IPR011990 GO:0005515
Car07g03356 278 TIGRFAM PPR: pentatricopeptide repeat domain 127 158 IPR002885 -
Car07g03356 278 Pfam PPR repeat 127 153 IPR002885 -
Car07g03356 278 Pfam PPR repeat 19 45 IPR002885 -
Car07g03356 278 PANTHER OSJNBB0038F03.9 PROTEIN 1 240 - -
Car07g03356 278 Gene3D Tetratricopeptide repeat domain 1 88 IPR011990 GO:0005515
Car07g03356 278 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03356 Car-Chr7 61610885 61611721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03356 1 278 EF-hand Containing Proteins AT1G02150 49.640 1.96e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03356 - - gmx:100777139 377.481