Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01238 ATGTTCAGCCCGCGTCCCACCAACGCGGTGACGCATCCATGTTTCAAATCTTCTTCCGAAATTCAATCCTCCGTTTCACCTTCTCTCTCTCATCACCCTCACTTGTTCCCTCTAAACCCCGTCACGCGCCACACTCTCTTAACCTCCGCGCCACAAAACCACGCGCCTCCCTGGCCGTCGTCGTTTCCGCCCCACCTCAAAGCGCCGCGTTTCAGTTACACCCCTGCAAACTTGACGCGCCTGAATAATTTATACCTCAAGTGCCGGAAAGTCGAGTTTGTACGCCAAATGTTTAATGAAATTCCCAAACTAGACGTTAATGCATGGAGGTGGAGTGCTATGATTACCAGTTTCGTGCGCAATGGAATGATAAAAGAAGTTTTGGAGTATATGAGGTTGATGTTAGTGGAAGGAATAAATCCAAATTTGGTTGTAGTGACAGTTGTTTTTGATGTTATAGGGAAAGTTGGTGCACGAAACTTAGGTAGAGAAGTTCATGGTTTTGTGGTGAAGAATATGTATTACAAGGAATTGTCTATTCTATCGGCATTGATCAATATGTATTGGAAGTGCAGCGATGTTGGTTCAGGTAGTCGAGTTTTGTATAGTGTAATGAAGAGGAAAGGTAAGTTTTGGATTGGATTGATGTCGGGGAGGCTTGAAGTTGAAATGAGGTCTGTGATTCGGTTGAAGAGGTTCAGGCCTGGTGCTGTAGCGGTTGCCTCTTTACTTCCCATTTGTGCACAGTTAAGGGCTCTGAAGCATGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGGCTTCTGCCTAACGTGTCCATAGTGTCTTCGTTGATGGTGTTGTACTCTAAGTGTGGTGTGATTCAGTATTCCATTAAACTTTTTGATGAAATGGAGGGGAAGAATGTGGTTTCATGGACAGCCATGGTCGCTTCATGCGTTGAAAATGGGCATCTGTGTGAAGCTCTTGGTGTCATGAGGTCAATGGGATTGACGGAGCATAAGCCAGATACGGTTACAATGGCTAGGGTGTTACATGTGTGTGGAGAGCTGAAAGTTTTAAAGCTTGGGAAGGAAGTTCACGGGCAAGTGTTGAAAAGGGGTTTTGCATCGGTCCATTATGTTGCTGCGGAAGTCATTGATATGTATGGGATTTGTGGAGATGTTGATAAGGCAAAGTTGGTATTTAGTGTAGTTCCTGTTAAAGGTTCAATGACATGGAGTGCTCTTATAAGGGCCTATGGGTGTAAGGAATGGTATCAGGAGGCAGTTGATCTTTTCGATGACATGATTTCAAATGGTTGCTCTCCGAACCGCTTCACTTTTGAAGCTGTTCTATCTATATGTGATAGGGCTGGATTTGTTGAAGATGCTTTTAGGATCTTTGATTTGATGTCGAGATATAAAATTGAAGCATCCAAAGAACACTGCAATTGCATGATTCGACTTCTAACTCGCTATGGTAAACTAGATGAGGCTCTAAGATATGTAGAAATGAGTTCTCCTTATAGCAGAGGACAAGACAAGCAGCTATAG 1536 0.4375 MFSPRPTNAVTHPCFKSSSEIQSSVSPSLSHHPHLFPLNPVTRHTLLTSAPQNHAPPWPSSFPPHLKAPRFSYTPANLTRLNNLYLKCRKVEFVRQMFNEIPKLDVNAWRWSAMITSFVRNGMIKEVLEYMRLMLVEGINPNLVVVTVVFDVIGKVGARNLGREVHGFVVKNMYYKELSILSALINMYWKCSDVGSGSRVLYSVMKRKGKFWIGLMSGRLEVEMRSVIRLKRFRPGAVAVASLLPICAQLRALKHGKEIHAYALRHWLLPNVSIVSSLMVLYSKCGVIQYSIKLFDEMEGKNVVSWTAMVASCVENGHLCEALGVMRSMGLTEHKPDTVTMARVLHVCGELKVLKLGKEVHGQVLKRGFASVHYVAAEVIDMYGICGDVDKAKLVFSVVPVKGSMTWSALIRAYGCKEWYQEAVDLFDDMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMSRYKIEASKEHCNCMIRLLTRYGKLDEALRYVEMSSPYSRGQDKQL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01238 511 Gene3D Tetratricopeptide repeat domain 376 503 IPR011990 GO:0005515
Spst4g01238 511 Gene3D Tetratricopeptide repeat domain 223 375 IPR011990 GO:0005515
Spst4g01238 511 Gene3D Tetratricopeptide repeat domain 65 222 IPR011990 GO:0005515
Spst4g01238 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Spst4g01238 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Spst4g01238 511 NCBIfam pentatricopeptide repeat 406 438 IPR002885 -
Spst4g01238 511 NCBIfam pentatricopeptide repeat 111 142 IPR002885 -
Spst4g01238 511 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 72 498 IPR046960 GO:0003723|GO:0009451
Spst4g01238 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 472 IPR002885 -
Spst4g01238 511 Pfam PPR repeat family 404 447 IPR002885 -
Spst4g01238 511 Pfam PPR repeat 111 139 IPR002885 -
Spst4g01238 511 Pfam PPR repeat 276 303 IPR002885 -
Spst4g01238 511 Pfam PPR repeat 477 497 IPR002885 -
Spst4g01238 511 Pfam PPR repeat 304 329 IPR002885 -
Spst4g01238 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Spst4g01238 511 FunFam Pentatricopeptide repeat-containing protein chloroplastic 256 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01238 Spst-Chr4 47251061 47252596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01238 114 498 Glycoside Hydrolase AT3G49170 25.000 3.27e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01238 - - gmx:100780947 780.4