Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0931 ATGATGGTTATTCAAATCCAAAGACCTAACTCTCTCAATTTGAACCTTTCTCTTCTCCATTCCTCTTCCCTCTCTCATTCCCCTAACTTTCTTCCCTTCATTCAAAGGAATAGTAGTAGTAGTAGAAGAAAGAGCTTCTCAGTGAAATGCTTCTCCATCTCAAAGATACATGGTTATGGAACCCTTGATTACGAACGAAGACCCATTGTGAAATGGAACGATGTGTACAAGAGGATATCATTCATGCCTAACTCTGAATTGGGTTCTGTAGATGTGTTGAATCAGTGGGAGAATGAAGGTAAGAATCTCACTAAATGGGATCTCTCTAGAGTTGTTAAGGAATTGAGGAAATACAAGAGACACCAAAGGGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAGTATCTTCAAGTGATGCAGCAATCCAGTTAGATCTAATAGCCAAAGTTCGGGGAGTGTCTAGTGCAGAAGAATTTTTTGAGAGACTGACTAATAAGTTAAAAGACAGGAGGACACATGGATCTCTTTTGAATGTATATGTGCATTTTAGATTGAAGGAAAAGGCAGAATCTTTACTTGAAAAAATGAGGAGTAAAGGGTATGCGGTACATTCACTACCATTTAATGTAATGATGACTATGTACATGAACCTTAAGGAATATGAGAAAGTTGATACTTTGGTCTCAGAAATGATAGAGAAAAAAGTAAATCTTGATATCTACTCATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGAGAAATAGAGAAGATGGAACAAGCGTTTGAACAGATGTCGCAGGATCCTACCATTATCCCTAACTGGACTACATTCAGCACAATGGCGTCAATGTACATGAAGATGGATCAGTTTGAAAAAGCAGAAGAGTGCTTGAGAAAGGTTGAGAGCCGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTGTATGGAAATATTGGGAAAAAAGACGAAATTTTCCGTATTTGGAAAACCTATAAGTCAATTTTCCCCACTATACCAAACTTGGGATACCATGCTATCATTTCTTCTCTGATAAGATTGGGTGATATTGAGGGTGCAGAAACTCTTTATCAGGAGTGGGTTTCAATGAAATCATCTTATGATCCTAGAATAGGAAACCTTCTCATTGGCTGGTATGTTAAGAATGGCGATACGGATAAAGCTCTGGAGTTCTTTAAGCAAATGAAAGAAGCTGGTGGAGTTCCAAATTCAAGTACATGGGAGGTTCTTTCTGAGTTACATATTGCAGATAAGAGTATTTCCGATGCTCTGTCTTGCTTGAAAGAAGCTTTCGTGGCTGAAGGTTCAAAGAGTTGGAGACCAAAACCCCCGAACGTGATCGCGTTCTTTGAGCTTTGTCAGGAAGAAGATGACACGGCGAGCGCCGACGTTTTAATTTCATTGCTGCGGCAGTCAAATTTTTTTGATGAAGTTTATGCATCAGCCATCGGCTTATCTGATGATACCATCATCAAAGGTGATTTGTCAAGCAAGGTTGATACAGCAGATACAAGTGATGTTATCAATGATGATGAAAACATAGATGATGATTCTCAGAAGTTGTTCAACCAATTGGAGAGTAGCTTTTGA 1641 0.3857 MMVIQIQRPNSLNLNLSLLHSSSLSHSPNFLPFIQRNSSSSRRKSFSVKCFSISKIHGYGTLDYERRPIVKWNDVYKRISFMPNSELGSVDVLNQWENEGKNLTKWDLSRVVKELRKYKRHQRALEVYDWMNNRPERFRVSSSDAAIQLDLIAKVRGVSSAEEFFERLTNKLKDRRTHGSLLNVYVHFRLKEKAESLLEKMRSKGYAVHSLPFNVMMTMYMNLKEYEKVDTLVSEMIEKKVNLDIYSYNIWLSSCGSQGEIEKMEQAFEQMSQDPTIIPNWTTFSTMASMYMKMDQFEKAEECLRKVESRIKGRDRIPFHYLLSLYGNIGKKDEIFRIWKTYKSIFPTIPNLGYHAIISSLIRLGDIEGAETLYQEWVSMKSSYDPRIGNLLIGWYVKNGDTDKALEFFKQMKEAGGVPNSSTWEVLSELHIADKSISDALSCLKEAFVAEGSKSWRPKPPNVIAFFELCQEEDDTASADVLISLLRQSNFFDEVYASAIGLSDDTIIKGDLSSKVDTADTSDVINDDENIDDDSQKLFNQLESSF* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0931 546 Gene3D Tetratricopeptide repeat domain 353 460 IPR011990 GO:0005515
Lan1g0931 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Lan1g0931 546 PANTHER OS12G0527900 PROTEIN 35 503 - -
Lan1g0931 546 PANTHER OSJNBB0038F03.9 PROTEIN 35 503 - -
Lan1g0931 546 Pfam Pentatricopeptide repeat domain 232 292 IPR002885 -
Lan1g0931 546 Gene3D Tetratricopeptide repeat domain 105 274 IPR011990 GO:0005515
Lan1g0931 546 Gene3D Tetratricopeptide repeat domain 275 352 IPR011990 GO:0005515
Lan1g0931 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Lan1g0931 546 Pfam PPR repeat 354 379 IPR002885 -
Lan1g0931 546 Pfam PPR repeat 177 205 IPR002885 -
Lan1g0931 546 SUPERFAMILY TPR-like 263 414 IPR011990 GO:0005515
Lan1g0931 546 TIGRFAM PPR: pentatricopeptide repeat domain 213 244 IPR002885 -
Lan1g0931 546 TIGRFAM PPR: pentatricopeptide repeat domain 246 273 IPR002885 -
Lan1g0931 546 TIGRFAM PPR: pentatricopeptide repeat domain 354 383 IPR002885 -
Lan1g0931 546 TIGRFAM PPR: pentatricopeptide repeat domain 390 420 IPR002885 -
Lan1g0931 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Lan1g0931 546 Pfam PPR repeat family 390 427 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0931 Lan-Chr1 20000597 20005671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g0931 43 526 EF-hand Containing Proteins AT1G02150 59.381 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0931 - - gmx:100780408 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0090 12 989765 993679 Lan1g0931 1 20000597 20005671 LSH