Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0800 ATGAGTCTCCCTCACATTCAATCCTCGTTGCTCAACCAAAacgtttctctctctctttcatctTCCCTCTCCTATTGTCCCCCACTCCCCTTCAAGCACTGCTCCTCCGCTCTCACCCTTGGTCACACGCAGAGCCCGTGCTGCCTCCCTCGCCTCTCGGTGACGTGTTCCATCTCGAAGATCCACAGCTACGGCACCGTGGACTACGAGCGCAGACCCATCGCGCGGTGGAACGACGTGTGCCGCAGGATATCGCTGAACCCCGACCCCGAAGTGGGGTCCGCCGCTGTGCTGAATCAGTGGGAGAACGAAGGGAGACACCTCACCAAATGGGAACTTTCCAGAGTCGTCAAGGAGTTGAGGAAGTACAAGAGATATCAGAGAGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCTGCGAGTGATGCAGCAATTCAGTTAGATCTAATTGCCAAAGTTCGTGGAGTTGCTAGTGCGGAAGCATTCTTTCTGAGTCTGGAAGATAAGTTAAAAGATAAGAGGACTTATGGTGCCCTTTTGAATGTATACGTGCATTCTAGATCAAAGGAAAAGGCAGAATCTTTATTTGACACAATGAGGAATAGAGGGTATGTAATACATCCACTACCATTTAATGTAATGATGACTCTGTACCTGAACCTTAAGGAATATGTTAAAGTTGATATGTTGGTTTCtgaaatgaaggaaaaaaacatACAGCTagatatttatacatataatatctGGTTATCTTCTTGTGGATCCCAAGGATCAATAGAAAAGATGGAACAAGCGTTTGAACAGATGGAAAAGGATCCTACCGTTGTCCCTAACTGGTCTACATTCAGCACAATGGCCTCAATGTACATTAGGATGGATCAGACTGAAAAAGCAGAAGAGTGCTTAAGAAAGGTTGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGAAGTGTTGGAAAGAAAGACGAAGTGTATCGTGTGTGGAATACGTACAAATCAATTTTTCCGAGAATACCAAACTTGGGATACCATGCTATTATGTCTTCTTTGGTTAAATTGGATGATATTGAGGGTGCAGAAGAACTTTATGAGGAATGGATTTCAGTAAAGTCAACTTATGATCCTAGAATAGGAAACCTTCTCCTAGGCTGGTATGTTAAGAAAGGAAATACAGATAAAGCTTTGAGTTTCTTTGAGCAGATGGAGGAGGGTGGTGGCAttccaaattcaaatacatGGGAGGTTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAGGCCCTGTCTTGCTTGAAAGAAGCTTTTATGGTTGCTAATGGTTCAAAGAGTTGGAGACCAAAGCCCTTAAACTTGTCTGCATTCCTTGAGCTTTGTCAAGAGCAAGATGACATGAAAAGTGCTGAGGTTTTAATTGGACTGTTGGGGAAGTCAAGATTTAGTAAAAATGAAGTTTATGCATCACTCATTGGCTCATCTGATGGTACCATTGGCAAAGGTGAATTGTCAAGAAAGATTGACACAGCAGATAGAACCGATGATATCGTTGACAGTGAAAACATGGATGGTGACTCTCAAATGTTGTTCAACCAACTAGAGAGTAGCTTTTGA 1662 0.4146 MSLPHIQSSLLNQNVSLSLSSSLSYCPPLPFKHCSSALTLGHTQSPCCLPRLSVTCSISKIHSYGTVDYERRPIARWNDVCRRISLNPDPEVGSAAVLNQWENEGRHLTKWELSRVVKELRKYKRYQRALEVYDWMNNRPERFRVSASDAAIQLDLIAKVRGVASAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRNRGYVIHPLPFNVMMTLYLNLKEYVKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQAFEQMEKDPTVVPNWSTFSTMASMYIRMDQTEKAEECLRKVESRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKSIFPRIPNLGYHAIMSSLVKLDDIEGAEELYEEWISVKSTYDPRIGNLLLGWYVKKGNTDKALSFFEQMEEGGGIPNSNTWEVLSEGHIADKRISEALSCLKEAFMVANGSKSWRPKPLNLSAFLELCQEQDDMKSAEVLIGLLGKSRFSKNEVYASLIGSSDGTIGKGELSRKIDTADRTDDIVDSENMDGDSQMLFNQLESSF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0800 553 Pfam Pentatricopeptide repeat domain 237 296 IPR002885 -
Ssu2g0800 553 PANTHER OSJNBB0038F03.9 PROTEIN 51 510 - -
Ssu2g0800 553 Pfam PPR repeat 395 421 IPR002885 -
Ssu2g0800 553 Pfam PPR repeat 182 210 IPR002885 -
Ssu2g0800 553 Pfam PPR repeat 359 383 IPR002885 -
Ssu2g0800 553 Gene3D Tetratricopeptide repeat domain 243 348 IPR011990 GO:0005515
Ssu2g0800 553 Gene3D Tetratricopeptide repeat domain 90 242 IPR011990 GO:0005515
Ssu2g0800 553 PANTHER OS12G0527900 PROTEIN 51 510 - -
Ssu2g0800 553 SUPERFAMILY TPR-like 270 417 IPR011990 GO:0005515
Ssu2g0800 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Ssu2g0800 553 Gene3D Tetratricopeptide repeat domain 349 489 IPR011990 GO:0005515
Ssu2g0800 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Ssu2g0800 553 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Ssu2g0800 553 TIGRFAM PPR: pentatricopeptide repeat domain 251 285 IPR002885 -
Ssu2g0800 553 TIGRFAM PPR: pentatricopeptide repeat domain 395 425 IPR002885 -
Ssu2g0800 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0800 Ssu-Chr2 41716986 41721551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0800 6 507 EF-hand Containing Proteins AT1G02150 59.163 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0800 - - gmx:100780408 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0800 2 41716986 41721551 Ssu2g0800 2 41716986 41721551 ECH