Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0125 ATGGAAACTTCACTTTCATCCCTTCTTCACTCTCACTCCTTCACCACTCTTCATTTCAAACCATTCTTACTACAACATCAACCTCTTTCCCTCTCCACTTCATCATTTACTAAATTACCCTTTTCCATTCACATTCACCACAAGGCTATTCCTGTAATTCCATCACCCCACACAAAAATCCACATCAATGCCCACTTGAGGGCTTTGGGGTTCGAACTAAACGATTGTCGTTTTCGAGGTATTGTTTCTAGCTTTGCAGCTTCGAATTCGATTCTAGAAGGGTTTAAGGTTCATGGGGTTTTGATAAAGAGTGGTTTTTTACCATCTAGTGTGGTTATCAATGCATGTTTGATTGAATTGTATTTCAAGTTTGGGGAAATTGAGCTTGCACGCCGCGTGTTTGATGAAAGTTGCCACAGAGATGTTTTTCTCTGGGGTGCTATGATTGGTGGTTTTGTTAGAAATAGGTTACCTAGGGATGCTTTGGAGTATGTGAGGTTGATGGTGGAAGATGGAATCAGGTTGAATTCGGTTTTGGTGACTATTATTCTTCCCGTGATTGGGGAGTTTCGTGCACGGAGGATAGGTAAGGAGGTTCATGCTTATGTTTTGAAGACAAGATTGGATTTTGAACAATTTGCGATTCAGTCGGCGTTGGTTGATATGTATTGCAAGTGCGGGGAGGTTGGTTTTGGAAGACGGGTTTTGTATAGCTCGATGGAGAGAAATGTTGGTTCTTGGAATGCTGTGATGTCAGGTTATGCATCTAGTGGGAGACTTGAGCAGGCAATCAGGTCCACAATTTGGGTGAGGAAGGGGTTCCGGCCTGGTGTTGTCGCGATTGCTACTGCTCTTCCGATTTGTTCACATTCGAGGGCTCTGAAACAGGGGAAGGAAATTCATGCTTATGCTTTGAAACATTGTTTTCTGCCTCACGTGTCTATAGTTTCTTCGTTGATGGTGTTGTATTCCAAGTGTGGTGTGATTGAGTATTCTTTAAAACTATTTGACAGGGTGGAACAAAAGAATGTGATACTGTGGACAGCCATGATCGATTCATATGTAGAAAGTGGGAGAATGTATGAAGCACTTGGAATCATAAGGTCAATGCAATTGACAGAGCATAAACCAGACACAGTCACCATAGCAAGGATGTTAAGTGTTTGCGGTGAACTAAAACTTGAAAAGCTTGGGAAGGAGATTCATGGACAAATATTGAAAAGAGATTTCACCTCAGTTCATTATGTTTCTGCCGAACTTATCAATATGTATGGGACTTGTGGAGTTGTTGAAAAGGCGAAGTTGGTGTTCCATGCAGTTCCTGTTAAAGGCTCAAGGACATGGACTGCTCTCATAAAAGCGTACGGGTACAAAAAATTGTATCAAGATGCAATTGACCTTTTAGATCAAATGGTCTCAAATGGTTTTTTTCCAAACACCTTCACTTTTGAAGCTGTTCTATCTATCTGTGATAGAGCTGGACTTGTTGAAGATGCTTTTAAGATCTTCAATTTAATGTCCAGATATAAAATTGAAGCATCTAAGGAACATTGCATTGTAATGATTCGACTTCTTACCCGCTATGGTAAACTAGATAAGACTCAAGAATTTGTAGAAATGATTTCTTCCCTAGAGTAG 1638 0.406 METSLSSLLHSHSFTTLHFKPFLLQHQPLSLSTSSFTKLPFSIHIHHKAIPVIPSPHTKIHINAHLRALGFELNDCRFRGIVSSFAASNSILEGFKVHGVLIKSGFLPSSVVINACLIELYFKFGEIELARRVFDESCHRDVFLWGAMIGGFVRNRLPRDALEYVRLMVEDGIRLNSVLVTIILPVIGEFRARRIGKEVHAYVLKTRLDFEQFAIQSALVDMYCKCGEVGFGRRVLYSSMERNVGSWNAVMSGYASSGRLEQAIRSTIWVRKGFRPGVVAIATALPICSHSRALKQGKEIHAYALKHCFLPHVSIVSSLMVLYSKCGVIEYSLKLFDRVEQKNVILWTAMIDSYVESGRMYEALGIIRSMQLTEHKPDTVTIARMLSVCGELKLEKLGKEIHGQILKRDFTSVHYVSAELINMYGTCGVVEKAKLVFHAVPVKGSRTWTALIKAYGYKKLYQDAIDLLDQMVSNGFFPNTFTFEAVLSICDRAGLVEDAFKIFNLMSRYKIEASKEHCIVMIRLLTRYGKLDKTQEFVEMISSLE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0125 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lal14g0125 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Lal14g0125 545 Pfam PPR repeat family 446 488 IPR002885 -
Lal14g0125 545 Gene3D Tetratricopeptide repeat domain 268 415 IPR011990 GO:0005515
Lal14g0125 545 Gene3D Tetratricopeptide repeat domain 416 544 IPR011990 GO:0005515
Lal14g0125 545 Gene3D Tetratricopeptide repeat domain 60 209 IPR011990 GO:0005515
Lal14g0125 545 PANTHER - 64 544 - -
Lal14g0125 545 Gene3D Tetratricopeptide repeat domain 212 267 IPR011990 GO:0005515
Lal14g0125 545 Pfam PPR repeat 144 173 IPR002885 -
Lal14g0125 545 Pfam PPR repeat 346 371 IPR002885 -
Lal14g0125 545 Pfam PPR repeat 246 264 IPR002885 -
Lal14g0125 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Lal14g0125 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Lal14g0125 545 TIGRFAM PPR: pentatricopeptide repeat domain 144 176 IPR002885 -
Lal14g0125 545 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Lal14g0125 545 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Lal14g0125 545 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 64 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0125 Lal-Chr14 1253642 1255279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0125 69 541 Glycoside Hydrolase AT3G49170 25.934 1.89e-51 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0125 - - lang:109361554 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0125 14 1253642 1255279 Lal9g1493 9 17214710 17216788 PCT