Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g00100 ATGATGGCAACGCCACTTCAAATTCAATCTTCTCTGCAAAACCAAAGCTTTTCACTTTCACTTTCATCTTCCTTTTGCTATTCCAATACTCTTCCCTTCAAACAAAGGGTTAGTGTCTGTTACACTTACAGTGTAAGAGCAATCTCAGTGACTTGTTCTATCTCAAAAGTTCATAACTATGGTACTGTTGATTATGAACGAAGACCCATTGTGAAATGGAATGTTCTTTACAAAAGAATTTGTATGATGGAAAATCCTGAATTGGGTTCTGCTTCTGAGTTGAATCGGTGGGAAAATGAAGGCAAAACTCTTACCAaatgggaactttgtagaattGTCAAAGAGTTGAGAAAGTATAGAAGACATGATAGAGCTCTTCAGGTATATGAGTGGATGAACAATAGACCAGAGAGGTTTAGAATACATGCAAGTGACGCAGCAATTCAATTAGATCTAATCGCAAGAGTTCAGGGAGTTTCTACGGCAGAAGGATATTTTCTGAACCTGACTAAAGATTTAAAAGACAAGAGGACACACGGTGCTCTATTGAATGCGTATGTTCATTCTAGATCAAAAGAGAAGGCAGAATCTTTATTCGACGTAATGAGGGGTAAAAGGTACTTAATACATTCACTGCCGTTTAATTTAATGATGACTCTCTACATGAACCTTAAGGATTATGATAAGGTTGATATGATGGTTTCAGAGATGAAAGAAAATAACATACAGTTagatatatatacatataatatctGGTTATCTTCATGTGGATCTCAAGAATCAGTAGAAAAGATGGAACAAGTGTTTGAACAAATGTTGAAGGATCCTACGATTATCCCTAACTGGAGTACATTTAGCACAATGGCTGCAATGTACATTAAGATGGAAATGTTTGAGAAAGCACATGAGTGCTTAAAAAAGATGGAGGTTAGACTATTAGGTCGAGATCGAATACCTTTTCATTATCTCCTAAGTTTGTATGGAAGCATTGGAAACAAGGACGAAGTTTATCGCGTGTGGAATAACTATAAAACAACATTTCCAAGGATACCAAATTTGGGATACCATGCTGTTATTTCTTCTCTCGTGAGAATAAACGATATTGAGGGTGCGGAAAAGCTTTATGAAGAATGGGTTTCGGTAAGGCCGAATGATGATTCTAGAGTAGCAAACCTTATCATAGGCTGGTATATTAAGAATGGCGAATTTGATAAAGCTCTTGGTTTCTTTGAGCATATGATTGAAGGCGGAGGTAGTCCGAATTCAAGTACATGGGACATTCTTTCTGAAGCTCATGTTGCTGAAAAGAGGATTTCAGACGCCCTGTCGTGCTTGAAAAAGGCTTTTAAGACTGGTGGTTCAAAGAGTTGGAACCTAAAGCCAAGAAAATTAGCTGCATTTCTTAAGCTTTGTCGAGATGAAGACGACATGGAGAGTGCTGAAGTTTTAATTGAGTTATTGAGGCAGTTCGGATACCATAAAAACGAAGCGTATGCATCACTCATTGGCAATGATGAACTGTCAAGCACGATTGAAGGAATTGATGATATTGTTTACAGTGAAAACATGGATTATGATGATGACGATGGCTCTCATCAAGTGGTTTTCAACCAAGTAGATAGTAGCTTTTGA 1632 0.3676 MMATPLQIQSSLQNQSFSLSLSSSFCYSNTLPFKQRVSVCYTYSVRAISVTCSISKVHNYGTVDYERRPIVKWNVLYKRICMMENPELGSASELNRWENEGKTLTKWELCRIVKELRKYRRHDRALQVYEWMNNRPERFRIHASDAAIQLDLIARVQGVSTAEGYFLNLTKDLKDKRTHGALLNAYVHSRSKEKAESLFDVMRGKRYLIHSLPFNLMMTLYMNLKDYDKVDMMVSEMKENNIQLDIYTYNIWLSSCGSQESVEKMEQVFEQMLKDPTIIPNWSTFSTMAAMYIKMEMFEKAHECLKKMEVRLLGRDRIPFHYLLSLYGSIGNKDEVYRVWNNYKTTFPRIPNLGYHAVISSLVRINDIEGAEKLYEEWVSVRPNDDSRVANLIIGWYIKNGEFDKALGFFEHMIEGGGSPNSSTWDILSEAHVAEKRISDALSCLKKAFKTGGSKSWNLKPRKLAAFLKLCRDEDDMESAEVLIELLRQFGYHKNEAYASLIGNDELSSTIEGIDDIVYSENMDYDDDDGSHQVVFNQVDSSF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g00100 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Tsu08g00100 543 TIGRFAM PPR: pentatricopeptide repeat domain 214 245 IPR002885 -
Tsu08g00100 543 TIGRFAM PPR: pentatricopeptide repeat domain 391 421 IPR002885 -
Tsu08g00100 543 TIGRFAM PPR: pentatricopeptide repeat domain 247 275 IPR002885 -
Tsu08g00100 543 Gene3D Tetratricopeptide repeat domain 86 235 IPR011990 GO:0005515
Tsu08g00100 543 Pfam PPR repeat 355 379 IPR002885 -
Tsu08g00100 543 Pfam PPR repeat 178 205 IPR002885 -
Tsu08g00100 543 Pfam PPR repeat 391 417 IPR002885 -
Tsu08g00100 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Tsu08g00100 543 Gene3D Tetratricopeptide repeat domain 236 352 IPR011990 GO:0005515
Tsu08g00100 543 Gene3D Tetratricopeptide repeat domain 353 512 IPR011990 GO:0005515
Tsu08g00100 543 Pfam Pentatricopeptide repeat domain 234 292 IPR002885 -
Tsu08g00100 543 PANTHER OS12G0527900 PROTEIN 44 504 - -
Tsu08g00100 543 SUPERFAMILY TPR-like 237 450 IPR011990 GO:0005515
Tsu08g00100 543 PANTHER OSJNBB0038F03.9 PROTEIN 44 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g00100 Tsu-Chr8 928689 932626 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g00100 8 506 EF-hand Containing Proteins AT1G02150 57.715 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g00100 - - gmx:100777139 708.753