Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car07g03359 ATGTACTCCAAGTTTGGTAGCATAAACTATGCTCAACATGTTTTTGATGAAATGTTGGACAGAAATGATGCTTCTTGGAATAACATGATGTCGGGGTTTGTTCGAGTGGGTCGGTACCATAAAGCTATGCAATTCTTTTGCCACATGTTAGAATATGGTGTTACCCCAAGCAGCTATGTAGTTGCTAGTTTAGTGACTGCCTGTGATAGGTCAGGGTGCATTGAAGGGGCACTTCAGATTCATGATTATGTTGTCAAAAGCGGTTTGATGTCTAATGTATTCGTTGGTACTAGTTTGCTGCACTTTTATGGTACACATTGTACGGTTTCTGAGGCTAACAAACTCTTTGAGGAGATTGAGGAACCAAATATAGTCTCTTGGACTTCTTTGATGGTTTGCTATGCAGATAATGGGTATGCAAAAGAAGTTCTAAATATTTATCGGCATTTAAGAAACAACGGGTTAATTTGTAATGAAAATACAATGGCTACTGTTGTTAGAACTTGTGGAATGTTTGGGGATAAAACCATGGGTTATCAAATCCTTGGAGATGTTGTCAAATCTGGCTTAGACACTGGTAGTGTCTCTGTGGCGAACTCCCTTATATCCATGTTCGGTAATTATGATAGTGTAGAGGAGGCATCATGTGTGTTTAATAACATGAAGGAACGTGATACTATTTCGTGGAATTCAATTATTACTGCAAGTGCACATAATGGTCATTTCGAAGAATCTCTAGGACACTTCTTTTGGATGCGTCATACTCACACGGAAACAAATTATATTACTATATCAGCCTTGTTACCGGTATTCGGTTCTGCACAACATTTGAAGTGGGGAAGAGGACTTCACAGTCTAATAGTAAAAGTTGGACTGGAATCAAATGTTTGTGTATGTAATAGTCTTTTAAGTATGTATTCTCAGGCTGGATCATCTGAGGATGCAGAGTTTGTTTTTCATACAATGCCAGAGAAAGATTTAATTTCATGGAATTCCATGATGGTAAGCCATGTTGAAGATGGAAAATATTCACATGCCATACAACTTCTGATTGAGATGCTCAAAACAAGAAAGGCAACGAACTATGTAACTTTTACAACTGCATTATCTGCCTGTTATAATTTAGAAAAACTAAAGATTGTTCATGCCTTTGTGATTCATTATGGCCTACATCACAATTTAATGATAGGTAATACATTGGTTACCATGTATGGGAAGTTTGGCTTGATGGCTGAAGCACAGCAGGTGCGCAAAATAATGCCTGTGAGAGATGTGGTAACATGGAATGCACTGATAGGTGGCCATGCCGATAACAAAGAACCAAATGCCGCAATTGAAGCATTCAACTTATTGAGAGAAGAAGGTTTACTTGTAAACTACATTACTATTGTCAATCTTCTCGGTGCTTGTTTGTCTCCCGATTATCTTTTGGAACATGGAATGCCAATCCACGCACACATAATTGTGGCAGGATTTGAATTAAATACGTATGTCCAAAGCTCCCTAATTACAATGTATGCCCAGTGTGGTGATCTTAAAACAAGTAACTATATTTTTGATGTAATAGCTAATAAAAATTCTAGTACTTGGAATGCCATTCTTTCTGCAAATGCCCATTATGGGCCTGGTGAGGAAGCACTAAAATTTATTGCCAGGATGAGAAATGACGGGGTTGATTTAGATCAATTTAGCTTCTCCGTAGCTCTTGCCACTATTGGTAACTTGACGGTACTAGATGAGGGACAGCAGCTTCACAGCTGGATTATTAAACTTGGGTTCAAGTCAAATGAATACGTTTTAAATGCTACAATGGATATGTATGGAAAATGTGGAGAAATTGATGATGTATTTAGAATCCTTCCCCTACCAAAAAGCAGGTCACAGAGGTCTTGGAACATTTTAATATCAGCATTGGCCAGACATGGGTTTTTCCGCCAGGCTACCGAGGCCTTTCGTGAGATGCTTGATCTGGGGATGAGACCTGATCATGTCACTTTTGTTTCACTTCTGTCTGCCTGCAGCCATGGAGGTTTGGTGGATGAGGGTCTTGCATACTTCTCTTCAATGACTACCGAATTTGGTGTCCCTACTAGAATAGAGCATTGTGTATGCATAATTGATCTTCTTGGGCGATCAGGAAAGCTTGCAGAGGCTGAAGCTTTCATTGATAAGATGCCAGTCCCACCAAATGACCTCGTTTGGCGTAGCTTGTTGGCTTCTTGCAAAATACATGGAAATTTGGAGCTCGGTAGGAAAGCTGCTGATCGTCTTTTCGAGCTGGACTCATCTGATGATTCGGCCTATGTTCTTTATTCCAATGTCTGTGCATCTACACAAAGGTGGGGAGATGTAGAAAATGTGAGAAATCAAATGGAATCACACAGCTTAAAGAAGAAACCTGCCTGTAGTTGGATCAAGTTGAAAAACAAGGTTATGACTTTTGGTATGGGAGACCAGTTTCATCCACAAACTGCACAAATCTATGGAAAGTTAGAAGAGCTAAGAAAGATGGTTAGAGAAGAAGGCTACATGCCAGACACAAGCTATGCATTACAAGATACAGACGAAGAACAAAAGGAGCATAATCTTTGGAACCACAGCGAGAGACTTGCCCTTGCATTTGGTTTGATCAATAGTCCTGAAGGCTCACCTCTTAGAATTTTTAAGAATCTTCGTGTTTGTGGTGATTGCCACTCTGTTTTCAAGCTAGTTAGTAAAACTGTTGGTAGGAAAATCATAGTAAGGGATTCATACCGGTTTCATCATTTCTATGGTGGCAAGTGTTCTTGTTCAGACTATTGGTAG 2805 0.3954 MYSKFGSINYAQHVFDEMLDRNDASWNNMMSGFVRVGRYHKAMQFFCHMLEYGVTPSSYVVASLVTACDRSGCIEGALQIHDYVVKSGLMSNVFVGTSLLHFYGTHCTVSEANKLFEEIEEPNIVSWTSLMVCYADNGYAKEVLNIYRHLRNNGLICNENTMATVVRTCGMFGDKTMGYQILGDVVKSGLDTGSVSVANSLISMFGNYDSVEEASCVFNNMKERDTISWNSIITASAHNGHFEESLGHFFWMRHTHTETNYITISALLPVFGSAQHLKWGRGLHSLIVKVGLESNVCVCNSLLSMYSQAGSSEDAEFVFHTMPEKDLISWNSMMVSHVEDGKYSHAIQLLIEMLKTRKATNYVTFTTALSACYNLEKLKIVHAFVIHYGLHHNLMIGNTLVTMYGKFGLMAEAQQVRKIMPVRDVVTWNALIGGHADNKEPNAAIEAFNLLREEGLLVNYITIVNLLGACLSPDYLLEHGMPIHAHIIVAGFELNTYVQSSLITMYAQCGDLKTSNYIFDVIANKNSSTWNAILSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFKSNEYVLNATMDMYGKCGEIDDVFRILPLPKSRSQRSWNILISALARHGFFRQATEAFREMLDLGMRPDHVTFVSLLSACSHGGLVDEGLAYFSSMTTEFGVPTRIEHCVCIIDLLGRSGKLAEAEAFIDKMPVPPNDLVWRSLLASCKIHGNLELGRKAADRLFELDSSDDSAYVLYSNVCASTQRWGDVENVRNQMESHSLKKKPACSWIKLKNKVMTFGMGDQFHPQTAQIYGKLEELRKMVREEGYMPDTSYALQDTDEEQKEHNLWNHSERLALAFGLINSPEGSPLRIFKNLRVCGDCHSVFKLVSKTVGRKIIVRDSYRFHHFYGGKCSCSDYW 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 623 822 IPR011990 GO:0005515
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 476 622 IPR011990 GO:0005515
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 1 82 IPR011990 GO:0005515
Car07g03359 934 Pfam PPR repeat 227 247 IPR002885 -
Car07g03359 934 Pfam PPR repeat 426 456 IPR002885 -
Car07g03359 934 Pfam PPR repeat 704 725 IPR002885 -
Car07g03359 934 Pfam PPR repeat 199 224 IPR002885 -
Car07g03359 934 Pfam PPR repeat 125 155 IPR002885 -
Car07g03359 934 Pfam PPR repeat 298 326 IPR002885 -
Car07g03359 934 Pfam PPR repeat 528 558 IPR002885 -
Car07g03359 934 Pfam PPR repeat 328 355 IPR002885 -
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 84 184 IPR011990 GO:0005515
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 277 377 IPR011990 GO:0005515
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 185 276 IPR011990 GO:0005515
Car07g03359 934 Gene3D Tetratricopeptide repeat domain 378 475 IPR011990 GO:0005515
Car07g03359 934 Pfam E motif 744 806 IPR046848 -
Car07g03359 934 PANTHER OS11G0680200 PROTEIN 1 77 - -
Car07g03359 934 PANTHER OS11G0680200 PROTEIN 81 189 - -
Car07g03359 934 PANTHER OS11G0680200 PROTEIN 180 920 - -
Car07g03359 934 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 77 - -
Car07g03359 934 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 180 920 - -
Car07g03359 934 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 81 189 - -
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Car07g03359 934 Pfam PPR repeat family 22 68 IPR002885 -
Car07g03359 934 Pfam PPR repeat family 630 674 IPR002885 -
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 627 661 IPR002885 -
Car07g03359 934 TIGRFAM PPR: pentatricopeptide repeat domain 25 57 IPR002885 -
Car07g03359 934 TIGRFAM PPR: pentatricopeptide repeat domain 630 662 IPR002885 -
Car07g03359 934 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Car07g03359 934 TIGRFAM PPR: pentatricopeptide repeat domain 298 326 IPR002885 -
Car07g03359 934 Pfam DYW family of nucleic acid deaminases 842 934 IPR032867 GO:0008270
Car07g03359 934 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car07g03359 Car-Chr7 61616136 61619862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car07g03359 161 934 Glycoside Hydrolase AT3G49170 33.333 4.20e-150 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car07g03359 - - mtr:MTR_3g029530 1728.76