Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0030 AAGAAGAAGATATTGAAGATGGTTGTTCAGATCCAAACACCAAACTCTCTGAGCTTGAACCTTTCTCTTCTTCATTCTTCTTCTTCTTCTTCTTCTCTCTCTTATTCACCTAAGTTTATTCATTTGATTGAAAGGAATAGTAGTAGGAGGAAGAGTCTCTCAGTGACGTGTTTGTCCATATCAAAGATACATGGTTATGGAACCCTTGATTACGAGCGCAGACCCATTGTGAAGTGGAACGATGTTTACAAGAGGATAACCTTCATGCCTAACCCTCAATTGGGTTCTTCAGATGTGTTGAACCAATGGGAGAATGAAGGCAAGAATCTCACTAAATGGGATCTCTCTAGGGTTGTCAAAGAGTTAAGGAAATACAAGAGACATCAAAGGGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAGTATCTTCAAGTGATGCAGCAATCCAGTTAGATCTAATATCCAAAGTTCGGGGAGTGTCTAGTGCAGAAGAATTTTTTATGAGACTGACTGATAAGTTAAAAGACAGGAGGACACATGGATCTCTTTTGAATGTATACGTGCATTTTAGATTGAAGGAAAAGGCGGAATCTTTACTTGAAAAAATGAGGAGTAAAGGGTATGCAGTACATTCACTACCGTTTAATGTAATGATGACTATGTACATGAACCTTAAGGAATATGAGAAAGTTGATACTTTGGTCTCAGAAATGATAGAGAAAAAAGTACAACTAGATATCTACTCATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGAGAAATAGAGAAGATGGAACAAGCGTTTGAACAGATGTCGCAGGATCCTACCATTATCCCTAACTGGACTACATTCAGCACAATGGCTTCAATGTACATGAAGATGGATCAGTTTGAAAAAGCAGAAGAGTGCTTGAGAAAGGTTGAGACTCGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTGTATGGAAATATTGGGAAAAAAGATGAAATTTACCGTATTTGGAAAACCTATAAGTCAATTTTTCCCACTATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGATAAGATTGGGTGATATTGAGGGTGCAGAAACTCTTTATCAGGAGTGGATTTCAGTGAAATCATCTTATGATCCTAGAATAGGAAACCTTCTCATTGGCTGGTATGTTAAGAAAGGCGATACAGATATAGCTCTGGAGTTCTTTAAGCAAATGAAAAAAGCTGGTGGAGTTCCAAATTCAAGTACATGGGAGCTTCTTTCTGAGTTACATATTGCAGATAAGGTGATTTCCGAAGCTCTGTCCTGCTTGAAAGAAGCTTTCGTGGCTGAAGGGTCAAAGAGTTGGAGACCAAAACCCTCAAATGTGACAGCGTTCTTTGAGCTTTGTCAGGACGAAGATGACACAGCGAGTGCTGACGTTTTAATTTCATTGCTACGGCAGTCAAAATTTCTCGATGAAGTTTATGCATCAGCCATTGGCTTATCTGATAATACCATCAGCAAAGGCGATTTGTCAAGCAAGGTTGATGATAAAGCAGATAGAAGTGATGTTATCAATGATGAGGAAAACATAGATGATGACTCTTAG 1632 0.383 KKKILKMVVQIQTPNSLSLNLSLLHSSSSSSSLSYSPKFIHLIERNSSRRKSLSVTCLSISKIHGYGTLDYERRPIVKWNDVYKRITFMPNPQLGSSDVLNQWENEGKNLTKWDLSRVVKELRKYKRHQRALEVYDWMNNRPERFRVSSSDAAIQLDLISKVRGVSSAEEFFMRLTDKLKDRRTHGSLLNVYVHFRLKEKAESLLEKMRSKGYAVHSLPFNVMMTMYMNLKEYEKVDTLVSEMIEKKVQLDIYSYNIWLSSCGSQGEIEKMEQAFEQMSQDPTIIPNWTTFSTMASMYMKMDQFEKAEECLRKVETRIKGRDRIPFHYLLSLYGNIGKKDEIYRIWKTYKSIFPTIPNLGYHAIISSLIRLGDIEGAETLYQEWISVKSSYDPRIGNLLIGWYVKKGDTDIALEFFKQMKKAGGVPNSSTWELLSELHIADKVISEALSCLKEAFVAEGSKSWRPKPSNVTAFFELCQDEDDTASADVLISLLRQSKFLDEVYASAIGLSDNTISKGDLSSKVDDKADRSDVINDEENIDDDS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0030 543 PANTHER OS12G0527900 PROTEIN 42 510 - -
Lal19g0030 543 SUPERFAMILY TPR-like 270 420 IPR011990 GO:0005515
Lal19g0030 543 TIGRFAM PPR: pentatricopeptide repeat domain 397 427 IPR002885 -
Lal19g0030 543 TIGRFAM PPR: pentatricopeptide repeat domain 253 280 IPR002885 -
Lal19g0030 543 TIGRFAM PPR: pentatricopeptide repeat domain 220 251 IPR002885 -
Lal19g0030 543 Pfam Pentatricopeptide repeat domain 239 299 IPR002885 -
Lal19g0030 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Lal19g0030 543 MobiDBLite consensus disorder prediction 518 533 - -
Lal19g0030 543 MobiDBLite consensus disorder prediction 518 543 - -
Lal19g0030 543 Gene3D Tetratricopeptide repeat domain 359 487 IPR011990 GO:0005515
Lal19g0030 543 Pfam PPR repeat 397 423 IPR002885 -
Lal19g0030 543 Pfam PPR repeat 184 212 IPR002885 -
Lal19g0030 543 Pfam PPR repeat 361 385 IPR002885 -
Lal19g0030 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 281 IPR002885 -
Lal19g0030 543 Gene3D Tetratricopeptide repeat domain 112 279 IPR011990 GO:0005515
Lal19g0030 543 Gene3D Tetratricopeptide repeat domain 280 358 IPR011990 GO:0005515
Lal19g0030 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Lal19g0030 543 PANTHER OSJNBB0038F03.9 PROTEIN 42 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0030 Lal-Chr19 228541 230805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0030 50 525 EF-hand Containing Proteins AT1G02150 60.251 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0030 - - gmx:100780408 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0030 19 228541 230805 Lal19g0030 19 228541 230805 ECH
Lal14g0126 14 1259558 1264571 Lal19g0030 19 228541 230805 LSH