Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0685 ATGCTCCTTCAACACTTTGTGTCTCTCAAAAACCCTAACACTCCTCACATTCTCTCCTCTTCCCTCTCTTATTCTTCGGCAACACTTCCCTCCGTCTTCAACCCTTCTTCTTCCACCTTCCCTCACGCGCAACTCACGTGTCCTCGCACCCTCTCTGTCACGTGCACTGCGTCCAACGCCCAAACCGTGGGTTACAGGCGAAAACCCGCTGAAGCGTGGAAAGCTATATGCAAGAGGATATCGTTGATTGAGAAGCCAGAAGTGGATTCTTCTACTGTGTTGAATCAGTGGGAGAGTAAAGGAAAATGGATCAAGAAATTGGATGTTTGTAGAGTCATCAAAGACTTGAGAAAATTCAACAAGCATAGAAGGGCACTTGAGGTATATGATTGGATGGACAGAAGACCAGAGAGATATAGAATAACTCCGAGTGACATTGCAATTCAGTTAGATCTAATTGCCAAAGTTCATGGAGCTCCTAGTGCAGAAGCATTTTTTCTGAGGCTGCCTGATAAGGCAAAAAACAAGAGGACATATGGAGCCCTTTTGAATATATATGTGCATTTTCAGTTGAAGGAAAAGGCAGAATCTTTATTCGACACAATGAAGAGTAAAGGTCATGCAATTGAATCATTAACATTTAATGTAATGATGACTCTGTACATGAACTTCAAGGATTATGATCAGGTTGATATTTTGGTTTCAGAAATGATTAAGAACAACATAAAGCTGGATGCCTATTCATATAATATCTGGCTATCTTCTTGTGGATCTCAAGGATTAACAGAAAAGATGGAACAAGTGTTTGATCAGATGACAAAGGATCCTAACGTAGTTCCTAACTGTTCTACATTCACGACAATGGCTACAACTTACATTAAGATGAATCTGTTTGAAAAAGCAGAAGAGTGCATAAGAAACGCTGAGAGCAAAATCGAAGGTAGGGACAGAATACCTTATCATTATATCCTAAGTTTATATGGAAGTATTGGAAAGAAAGATGAAGTTTATCGTGTGTGGAATAACTATAAACTAAGTTTTCCCAGTATACCAAACTTGGGATACCATTCTGTTATTTCTTCCCTGGTTAGAATGGATGATATTGAGGGTGCAGAAAATCTCTATGAGCAATGGGTTTCAGCAAAAGCATTTTATGATCCTAGAATAGGAAACCTTCTCATAGGTTGGTATGTTAAGAATGGCAATACAGATAAAGCTATTAGGTTCTTTGACAGGATGAAAGAAGATGGTGGAGTTCCAAATCCAAGTACTTGGGAGCTTCTATCTATGTTGCATATTGCAGATAAAAGGGTAACTGAATCTCTGTCTTGCTTGAAAGAAGCTTTTGTGGCCAAAGGTTCAAAAAGTTGGAGACCAAACGCTACAAACTTGGACGCATTCTTTAAGCTATGTGAGGAACAAGGAGACATGGCATGCGCCGATGATTTGATCGAGTTGTTGAAGAAATCAGAATTTGTTAAAGATGAAGTTTATGCATCAATGATTGGCTTATCTGATGGTACCGTTGGCAAAGGTGAATGTTCAAGTAAGATTGATGCAGTAGATAAAACTATGGATTATAACTCGCAAATGTTGAACCAAATGGAAAGTAGTTTTTGA 1620 0.3901 MLLQHFVSLKNPNTPHILSSSLSYSSATLPSVFNPSSSTFPHAQLTCPRTLSVTCTASNAQTVGYRRKPAEAWKAICKRISLIEKPEVDSSTVLNQWESKGKWIKKLDVCRVIKDLRKFNKHRRALEVYDWMDRRPERYRITPSDIAIQLDLIAKVHGAPSAEAFFLRLPDKAKNKRTYGALLNIYVHFQLKEKAESLFDTMKSKGHAIESLTFNVMMTLYMNFKDYDQVDILVSEMIKNNIKLDAYSYNIWLSSCGSQGLTEKMEQVFDQMTKDPNVVPNCSTFTTMATTYIKMNLFEKAEECIRNAESKIEGRDRIPYHYILSLYGSIGKKDEVYRVWNNYKLSFPSIPNLGYHSVISSLVRMDDIEGAENLYEQWVSAKAFYDPRIGNLLIGWYVKNGNTDKAIRFFDRMKEDGGVPNPSTWELLSMLHIADKRVTESLSCLKEAFVAKGSKSWRPNATNLDAFFKLCEEQGDMACADDLIELLKKSEFVKDEVYASMIGLSDGTVGKGECSSKIDAVDKTMDYNSQMLNQMESSF* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0685 539 Gene3D Tetratricopeptide repeat domain 75 236 IPR011990 GO:0005515
Ahy19g0685 539 Gene3D Tetratricopeptide repeat domain 352 537 IPR011990 GO:0005515
Ahy19g0685 539 Gene3D Tetratricopeptide repeat domain 237 349 IPR011990 GO:0005515
Ahy19g0685 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Ahy19g0685 539 TIGRFAM PPR: pentatricopeptide repeat domain 247 282 IPR002885 -
Ahy19g0685 539 TIGRFAM PPR: pentatricopeptide repeat domain 391 421 IPR002885 -
Ahy19g0685 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 275 IPR002885 -
Ahy19g0685 539 PANTHER OS12G0527900 PROTEIN 44 505 - -
Ahy19g0685 539 Pfam PPR repeat 178 206 IPR002885 -
Ahy19g0685 539 Pfam PPR repeat 355 379 IPR002885 -
Ahy19g0685 539 Pfam PPR repeat 391 417 IPR002885 -
Ahy19g0685 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Ahy19g0685 539 Pfam Pentatricopeptide repeat domain 233 291 IPR002885 -
Ahy19g0685 539 PANTHER OSJNBB0038F03.9 PROTEIN 44 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0685 Ahy-Chr19 9440008 9443502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0685 1 520 EF-hand Containing Proteins AT1G02150 51.527 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0685 - - gmx:100780408 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0685 19 9440008 9443502 Ahy9g0558 9 7847159 7850179 hybridization