Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0468 ATGTTCTGCGTGCGTCACCCGAACACGGTGGCGCATCGACGTTTCAATCCTTCTATGGAAATTCAAACCTCTGCTTCGCCCTTTCTCGTTCTTCACCTTCACTCGTTCCCTCCAACCACCGCCACGCGCCACGCTCTCTCACTCTCCAACTTCAAACCTCTCCCACTCTCTGCGCAACAAAATCACGCGCCACCCTCGCTGCCATTACCACTCCACGCCAAAACGACGCGTTTCGGTTACGACCCTTCCAACGAGGCGCGTCTTATTGATTTGTATTTTCAGCGCGGGAAGGTAGAGCTTGCGCGCCAAGTGTTCGATGAAAATTCCGAACGAGATGTTGGCGTGTGGAGTGCTATGATCACTGGTTTTGCTCGCAATGGAATGCCAAGGAAAGCGTTGGAATATGCAAGGTTAATGGTAGAGGAAGGAATAAAGCCAAATTTGGTTGCAATGACAGTTATTCTTAATGCGGTTGGAGAAGTTTGTGCTCAGAAGTTAGGTCGGGAGGTTCATGGAGTTGTTGTGAAGATGATATTGTTTTATGAGGAATTGCCAATTCTATCGGCATTGATTGATATGTATTGGAAATGTGGTGATATTGGCTCGGGAAGCCGAGTTTTGTATAGCGTGATACTGAGGAACGATGGTTGTTGGATTGGATTGATGTCAGGGAGACTTGAGGTGGCAATGAGGTCCATGATTCGGTTGAAAAAGTTCCGGCCTGGTGTTGTCGTGGTTGCTTCGTCACTTCCGATTTGTGCGCAGTTGAGGGCTCTGAGACAGGGGAAGGAGATTCATGCTTATGCTTTGAAACATTGGTATTTACCTCACGTGTCCATTGTTGCTTCATTGATGGTGTTGTACTCTAAGTGTGGTGTGATTGAGTATTCTGTGAGACTGTTTAATGGAATGGAGGAGAGGAATGTGATTTTGTGGACTGCCATGATTGATTCGTTTGTGGAAAATGGCTGTGTGTACGAAGCGCTTGATGTCATAAGGTCAATGCAATTGACAAAGCATAGGCCAGATACAGTTACCATGGCTAGGATGTTGCGTGTTTGTGGCAAGCTAAGACTTGTAAAGCTTGGGAAGGAGGTTCATGGGCAGGTATTGAAAAGGGGTTTTACATCAGCGCATTATGTGGCTGCAGAACTTATCAATATGTATGGGATTTGTGGTGTTGTTAATAAGGCGAAGTTGGTGTTTAGTGCAGTTCCTGTTAAAGGTTCAATGACATGGAGTGCTCTTATAAGGGCCTATGGATATAAAGAATGGTATCGAGATGCAATTGACCTTTTTGATCACATGATAGCAAATGGTTGTTCTCCAAACCGCTACACTTTTGAATATGTTCTGTCTATTTGCGATAGAGCTGGATTTGTTGAAGATGCTTTTAGGATCTTTGATTTATTGTCAAGATATAAAATTGAAGCATCTGAGGAACACTGCATTATAATGATTCGACTTCTAACTCGCTATGGTAAATTAGACGAGGCTCAAAGATTTCTAGAAATGAGTTCTTCCTTATAG 1530 0.4425 MFCVRHPNTVAHRRFNPSMEIQTSASPFLVLHLHSFPPTTATRHALSLSNFKPLPLSAQQNHAPPSLPLPLHAKTTRFGYDPSNEARLIDLYFQRGKVELARQVFDENSERDVGVWSAMITGFARNGMPRKALEYARLMVEEGIKPNLVAMTVILNAVGEVCAQKLGREVHGVVVKMILFYEELPILSALIDMYWKCGDIGSGSRVLYSVILRNDGCWIGLMSGRLEVAMRSMIRLKKFRPGVVVVASSLPICAQLRALRQGKEIHAYALKHWYLPHVSIVASLMVLYSKCGVIEYSVRLFNGMEERNVILWTAMIDSFVENGCVYEALDVIRSMQLTKHRPDTVTMARMLRVCGKLRLVKLGKEVHGQVLKRGFTSAHYVAAELINMYGICGVVNKAKLVFSAVPVKGSMTWSALIRAYGYKEWYRDAIDLFDHMIANGCSPNRYTFEYVLSICDRAGFVEDAFRIFDLLSRYKIEASEEHCIIMIRLLTRYGKLDEAQRFLEMSSSL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0468 509 Pfam PPR repeat 311 336 IPR002885 -
Apr10g0468 509 Pfam PPR repeat 88 107 IPR002885 -
Apr10g0468 509 Pfam PPR repeat 115 144 IPR002885 -
Apr10g0468 509 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 86 509 - -
Apr10g0468 509 Gene3D Tetratricopeptide repeat domain 85 171 IPR011990 GO:0005515
Apr10g0468 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Apr10g0468 509 Pfam PPR repeat family 410 453 IPR002885 -
Apr10g0468 509 Gene3D Tetratricopeptide repeat domain 382 508 IPR011990 GO:0005515
Apr10g0468 509 Gene3D Tetratricopeptide repeat domain 186 381 IPR011990 GO:0005515
Apr10g0468 509 TIGRFAM PPR: pentatricopeptide repeat domain 412 444 IPR002885 -
Apr10g0468 509 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Apr10g0468 509 TIGRFAM PPR: pentatricopeptide repeat domain 115 147 IPR002885 -
Apr10g0468 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Apr10g0468 509 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Apr10g0468 509 PANTHER - 86 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0468 Apr-Chr10 11463526 11465177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0468 74 503 Glycoside Hydrolase AT3G49170 25.225 4.84e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0468 - - gmx:100780947 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0468 10 11463526 11465177 Apr4g2375 4 32647587 32649881 PCT