Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal14g0126 ATGATTGTTCAATTATGTTTGAATTTGAACATTCATCAAAACAACTTTTCACTTCACCAAAACAGCTTTTCTCCTCATCAAAACAGCTTTTTTCCTCATCAAAACAACTTTTTTATTAATGAAAACAACTTATGTCTTCATCATCGTCGATTCCACACTCTCTCCCTCTCAAATGATAATAAGAACAAGTATAGAGCCATTTACCCTCCTTGGAAAGAAATATGCAGAAGAATATCTTCATATTCGGTTTGTGATGCTAGCAGTGTTTTGGATGAGTGGGAAGAAGAAGGAAATACTGTGACTAAATGGGAAATTGGTCAAATCCTTAGAGAGATGAGGAAACTCAACAAACATCACCCTGCCCTCCAGGTATGTGACTGGATGAACAATAGAGAAGAGAGGTTTGGTTTTTCTGCAAGTGATGCTGCAGTTCAGATGGATCTAATTTCCAAAGTTCATGGAGTTGCTAGCGCGGAAGAATATTTCCGGAGCCTGAAAAACGTGTTAAAAGACAGGAAGACTTATTGTTCCCTTTTGAATGTATATGCACACTCTAGACTGAAGGAAAAGGCAGAATCTTTACTTCACACAATGAGGACCAAAGGGTATGCAATAAATTCACTACCGTTTAATGTCATGATGACTATGTACTTGAACCTTAAGGAATATGATAAAGTTGAAACGTTGGTTTCAGAAATGATACAAGCAAATGTAAAGCTAGATCTTTATTCGTACAATATCTGGTTATCTTCTCGTGGATCTCAAGGATCGGCCAAAAAGATGGAAGAAACGTATGAATTGTTGACAAAGGACAGAACCGTTGTCCCTAACTGGACTACATTCAGCACAGTGGCCAAATCATACACTAAGATGGGTCACTTTGAAAAGGCAGAAGAATACATAAGAAAGGTTGAAACTACCATTGAAGGTCGAAATAGAATACCCTTTCATTATCTCCTTACTTTATATGGAAATATTGGTAAGAAAGAAGAAGTTTACCGCGTATGGAATATTTATAAGTTAATTTTTCGCAGGGTAACAAACTTGGGATACCTTGCTTTTATGTCTTCTCTGGTAAGATTGGGTGATATTGAGGGTGCAGAAAATCTTTATGAGGAATGGCTTTCAGTAAAGTCATCTTATGATTCTAGAATAGGAGATCATCTTCTAGGTTGGTATGCGAAGAAAGGTGATACAAATAAAGCTCTCGAATTCTTTAAGCAGATGGCAAAATCTGGTCAAAATCTGTATTCAAGTACATGGGAGATTCTCTCTGAGGTACATATTTGTAATCAGAGAATTTCAGAGGCATTGTCCTGCTTGAAAGAAGCATTTATGGTTGGTGCTCCGAAGACTTGGAGACCAAATCCCGTAAAAGTGTCTGCGCTCTTCGAGCTTTGTCGCAAGCAAGATGACATGGAAAGCGCCGAGACTTTAATCGGGTTGTTGAGGCAGTCAGGATTTCTTGAAGATGAAGTTTATGCATCACTCATTGGCTTATCTGATGGTACCATTGGTAAGGTTGGATTGTCAATCAAGACTGATAGAGTGGATAGAATAAATAATATCTATGAAGATGAAAACACTGATGATGATGTCTCTGAAGTTGTTTGTGTTCAACCAACTAGAGGGTAG 1635 0.3774 MIVQLCLNLNIHQNNFSLHQNSFSPHQNSFFPHQNNFFINENNLCLHHRRFHTLSLSNDNKNKYRAIYPPWKEICRRISSYSVCDASSVLDEWEEEGNTVTKWEIGQILREMRKLNKHHPALQVCDWMNNREERFGFSASDAAVQMDLISKVHGVASAEEYFRSLKNVLKDRKTYCSLLNVYAHSRLKEKAESLLHTMRTKGYAINSLPFNVMMTMYLNLKEYDKVETLVSEMIQANVKLDLYSYNIWLSSRGSQGSAKKMEETYELLTKDRTVVPNWTTFSTVAKSYTKMGHFEKAEEYIRKVETTIEGRNRIPFHYLLTLYGNIGKKEEVYRVWNIYKLIFRRVTNLGYLAFMSSLVRLGDIEGAENLYEEWLSVKSSYDSRIGDHLLGWYAKKGDTNKALEFFKQMAKSGQNLYSSTWEILSEVHICNQRISEALSCLKEAFMVGAPKTWRPNPVKVSALFELCRKQDDMESAETLIGLLRQSGFLEDEVYASLIGLSDGTIGKVGLSIKTDRVDRINNIYEDENTDDDVSEVVCVQPTRG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal14g0126 544 Pfam PPR repeat 174 202 IPR002885 -
Lal14g0126 544 Pfam PPR repeat 351 375 IPR002885 -
Lal14g0126 544 Pfam PPR repeat 389 413 IPR002885 -
Lal14g0126 544 Gene3D Tetratricopeptide repeat domain 236 308 IPR011990 GO:0005515
Lal14g0126 544 Gene3D Tetratricopeptide repeat domain 85 235 IPR011990 GO:0005515
Lal14g0126 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lal14g0126 544 SUPERFAMILY TPR-like 278 445 IPR011990 GO:0005515
Lal14g0126 544 Gene3D Tetratricopeptide repeat domain 311 529 IPR011990 GO:0005515
Lal14g0126 544 TIGRFAM PPR: pentatricopeptide repeat domain 389 413 IPR002885 -
Lal14g0126 544 TIGRFAM PPR: pentatricopeptide repeat domain 210 241 IPR002885 -
Lal14g0126 544 TIGRFAM PPR: pentatricopeptide repeat domain 174 206 IPR002885 -
Lal14g0126 544 PANTHER OSJNBB0038F03.9 PROTEIN 69 501 - -
Lal14g0126 544 SUPERFAMILY TPR-like 158 377 IPR011990 GO:0005515
Lal14g0126 544 Pfam Pentatricopeptide repeat domain 229 288 IPR002885 -
Lal14g0126 544 PANTHER OS12G0527900 PROTEIN 69 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal14g0126 Lal-Chr14 1259558 1264571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal14g0126 71 502 EF-hand Containing Proteins AT1G02150 52.995 5.09e-164 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal14g0126 - - gmx:100780408 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g0126 14 1259558 1264571 Lal14g0126 14 1259558 1264571 ECH
Lal14g0126 14 1259558 1264571 Lal19g0030 19 228541 230805 LSH