Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0469 ATGGTTACAAGCGATTCCCACCTCTCTAGAGCTCCTCCTTCACTCTTTCCAATCTCAATTCAAAAGTTCCAAAACTCTAATCATTATCAATCCTCCACATTGAAAATCACCCAACTCCAACCAAAACGAAATGTGCCTCTCATCCAACATGAGCTTAACATAAACCTTCATGAAACACAACAACTTCATGGTCACTTCATCAAAACATGTTTTAACAGCAGTTACAAAGTCCCTTTTTCTTCTCTTGAATCCTATTCTAGCAATGCAGCGTTTTACAGCTTCCTAATAACTTCTTACATCAAGAACAACTGCCCCAAAGATGCAGTGAAAATCTATTCCTATATGCGTGGAACAGACACTGAAGTGGACAATTTTATCATACCATCAGTTCTCAAAGCATGTTGTCTTATCCCTTCAACCTTGTTAGGAAAAGAGGTGCATGGTTTTTTGGTGAAAAAAGGATTTCATGGAGATGTTTTTGTGTGTAACGCTTTGGTCATGATGTATAGTGAGGTTGGAAGCTTGGCATCTGCACGCCTATTATTTGATAAGATCGAGAATAAAGATGTTGTTTCTTGGAGTACTATGATTAGGAACTACGATAAGAGTGGGTTTCTTGATGAAGCATTGGACCTTATGAGAGTTATGCATGTTAAGGGAGTAAAGCCTAGTAAAATTGCACTGATAAGCATGATTCATGTTTTTGCAGAACTTGCTGATTCGAAATTGGGGAAAGCCTTGCATGGATATGTGATTAGGAATGGTAATTGTGGGAAATCAGGAGTTCCTTTAAGTACTGCTTTAATAGATATGTATGCTAAGTGTACAAATTTAGCATATGCAAGAAGGGTTTTTGATGGTGTATCTGGGGCTAGTATCATTTCATGGACTACTATGATTGCAGCCTACATTCATTGCAATAATTTGAATGAAGGGCAAAAATTGTTTGTCAAAATGCTAGGGGAGGGTGTGTTTCCAAATGAGATTACAATCCTTAGTTTGGTCAAAGAATGCGGCACCGCAGGATCTCTAGGACTAGGGAAGTGGTTACATGCTTTCACTTTAAGAAATGGGTTTACCATTTCTTTGGTTCTGGCCACTGCTTTTGTTGATATGTATGGCAAATGTGGCGATGTAACAAGTGCGAGACATGTTTTTGATAGCATCAAGAACATAGATTTAATGATGTGGAGTGCCATGATTTCAGCTTATGCTCAAAACAATTGTATAGATGAGGCATTTGGTATCTTTGTTCACATGACTGGTTGTGGAATTAGGCCAAATGAGATAACCATGGTTACCCTCCTTGTGTTATGTGCAAAAGCTGGATCCCTTGAAATGGGTAAGTGGATCCATTCTTACATAGACAAGCAAGGAATTAAAGGAGACATGATTCTTGAAACATCTTTGGTTGACATGTATGCCAAGTGTGGAGACATAGATACAGCTCATAGCCTATTTGCTGCCGCAACCAACCGAGACGTTTCAATGTGGAATGCCATGATATCAGGTTTTGCAATGCATGGTCATGGGGAGGCAGCATTGGAACTTCTTGAAGAAATGGAAGCACTAGGGTTTATCCCTAATGACATCACATTTATTGGAGCTCTTCATGCTTGTAGTCATTCTGGATTGTTGCAAGAAGGGAAGAGTCTGTTTCAAAAAATGGTTAATGATTTTGGTTTGGTACCAAAAATTGAGCACTATGGTTGTATGGTGGATCTCCTTGGTAGAGCTGGTTTGCTTAATGAAGCAAAGGAACTAATTGAGAACATGCCAATGAGGCCAAACATTGCTGTATTGGGATCTCTCCTCGCTGCATGCAAACTTCACAAAAATATCAAACTTGGAGAATGGGTAGCAAAACAGTTTCTCTCATTGGAACCCCACAAATGTGGATATAATGTTCTAATGTCAAACATATATGCATCAGCAAATAGATGGGGTGATGTTGCTTACATAAGGAGAGCTATGAAGGATGTAGGAATTAGTAAAGAACCAGGTGTTAGCTCCATTCAAGTGAATGGAATAGTTCACGAATTCATAACGGGAGGCAGGGAACACTCAGATACTAAAAAAATCTATGAAATGATTGATGAGATGAGAGAAAAACTTGAAGATGCTGGATACACCCCAGATATATCTTCTGTTTTGTTGAACATAGACAATGAGGAGAAAGAAACTACACTCAACTATCACAGTGAGAAACTGGCAATGGCATATGGTCTAATTAGCACAGCTCCTGGTGTTCCAATTAGAATTGTGAAGAATCTTAGAATTTGTGATGATTGTCATAATGCTACCAAGTTACTGTCCAAGATTTATGGGAGGGAGATCATAGTGAGGGACCGCAATCGTTTTCATCACTTCAAAGAAGGATCATGTTCTTGTTATGATTATTGGTAA 2406 0.3882 MVTSDSHLSRAPPSLFPISIQKFQNSNHYQSSTLKITQLQPKRNVPLIQHELNINLHETQQLHGHFIKTCFNSSYKVPFSSLESYSSNAAFYSFLITSYIKNNCPKDAVKIYSYMRGTDTEVDNFIIPSVLKACCLIPSTLLGKEVHGFLVKKGFHGDVFVCNALVMMYSEVGSLASARLLFDKIENKDVVSWSTMIRNYDKSGFLDEALDLMRVMHVKGVKPSKIALISMIHVFAELADSKLGKALHGYVIRNGNCGKSGVPLSTALIDMYAKCTNLAYARRVFDGVSGASIISWTTMIAAYIHCNNLNEGQKLFVKMLGEGVFPNEITILSLVKECGTAGSLGLGKWLHAFTLRNGFTISLVLATAFVDMYGKCGDVTSARHVFDSIKNIDLMMWSAMISAYAQNNCIDEAFGIFVHMTGCGIRPNEITMVTLLVLCAKAGSLEMGKWIHSYIDKQGIKGDMILETSLVDMYAKCGDIDTAHSLFAAATNRDVSMWNAMISGFAMHGHGEAALELLEEMEALGFIPNDITFIGALHACSHSGLLQEGKSLFQKMVNDFGLVPKIEHYGCMVDLLGRAGLLNEAKELIENMPMRPNIAVLGSLLAACKLHKNIKLGEWVAKQFLSLEPHKCGYNVLMSNIYASANRWGDVAYIRRAMKDVGISKEPGVSSIQVNGIVHEFITGGREHSDTKKIYEMIDEMREKLEDAGYTPDISSVLLNIDNEEKETTLNYHSEKLAMAYGLISTAPGVPIRIVKNLRICDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCYDYW* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0469 801 Gene3D Tetratricopeptide repeat domain 346 449 IPR011990 GO:0005515
Apr10g0469 801 Gene3D Tetratricopeptide repeat domain 257 345 IPR011990 GO:0005515
Apr10g0469 801 Gene3D Tetratricopeptide repeat domain 91 256 IPR011990 GO:0005515
Apr10g0469 801 Gene3D Tetratricopeptide repeat domain 450 666 IPR011990 GO:0005515
Apr10g0469 801 Pfam PPR repeat 191 221 IPR002885 -
Apr10g0469 801 Pfam PPR repeat 396 425 IPR002885 -
Apr10g0469 801 Pfam PPR repeat 568 593 IPR002885 -
Apr10g0469 801 Pfam PPR repeat 92 116 IPR002885 -
Apr10g0469 801 Pfam PPR repeat 468 487 IPR002885 -
Apr10g0469 801 Pfam PPR repeat 294 324 IPR002885 -
Apr10g0469 801 Pfam E motif 611 673 IPR046848 -
Apr10g0469 801 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Apr10g0469 801 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Apr10g0469 801 TIGRFAM PPR: pentatricopeptide repeat domain 191 224 IPR002885 -
Apr10g0469 801 TIGRFAM PPR: pentatricopeptide repeat domain 497 529 IPR002885 -
Apr10g0469 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Apr10g0469 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Apr10g0469 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Apr10g0469 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 93 451 - -
Apr10g0469 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 260 719 - -
Apr10g0469 801 PANTHER BNAC02G09320D PROTEIN 260 719 - -
Apr10g0469 801 PANTHER BNAC02G09320D PROTEIN 93 451 - -
Apr10g0469 801 Pfam DYW family of nucleic acid deaminases 709 801 IPR032867 GO:0008270
Apr10g0469 801 Pfam PPR repeat family 494 540 IPR002885 -
Apr10g0469 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0469 Apr-Chr10 11482113 11484518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0469 92 801 Glycoside Hydrolase AT3G49170 36.200 3.76e-154 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0469 - - gmx:100782031 1367.44