Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01531 ATGAGTCTCCTTCCACTTCAACCTCAATCCTCTCTTCACAACCAAAACCTCTCTCTCTCCTCTTCCCTCTGCTATTCCCCCCCGCTCCCCTCCCACCACTCTCTCGCCGCGGCTCGCACGTGCTGCTTCCCTCGTCTCTCGGTCACGTGCTCGATCTCCAAGATCCACAGCTACGGCACGGTGGACTACGAGCGCAGGCCCATCGTGCGCTGGAACGACGTGTACCGCAGGGTGTCGCTCAACAACGACCCCGATGTGGGCTCCGCCACCGTGCTCAATCAGTGGGAGAACCAAGGCAGGCACCTCACCAAGTGGGAGCTTTCTAGAGTTGTCAAGGAGTTGAGGAAGTACAGGAAGTATCATAGAGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCTGCGAGTGATGCAGCAATTCAGTTAGATCTAATTGCCAAAGTTCGTGGAGTTTCTAGTGCAGAAGTATTCTTTCTGAGTCTGGAAGAGAAGTTAAAAGAGAAGAGGACTTATGGTGCCCTTTTGAATGTATACGTGCATTCTAGATCGAAGGAAAAGGCAGAATCTTTACTTGACACAATGAGGAGTAAAGGGTATGTAATACATCCACTGCCATTTAATGTAATGATGACTCTGTACATGAACCTTGAGGAATATGATAAAGTTGATATGTTGGTTTCTGAAATGATGGAAAAAAACATAGAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGATCAATAGAAAAGATGGAACAAGTGTTTGAACAGATGGAAAAGGATCCTACCATTGTCCCCAACTGGTCAACATTCAGCACAATGGCTTCAATGTACATTAGGATGGATCAGAATGAAAAAGCAGTAGAGTGCTTAAGAAAGGTTGAGGGTATAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGACTTGTTGGAGAGAAAGATGAACTGTATCGTGTGTGGAATACTTACAAATCAATTTTTCCAAGTATACCAAACTTGGGATACCATGCTATTATTTCTCCTCTTGTAAAATTGGATGAAATTGAAGGTGCAGAAAAACTTTATGAGGAATGGGTTTCAGTAAAGGCAACATATGATCCTAGAATCGGAAACCTTCTTCTTGGCTGGTATGTTAAGAAAGGCAATACAGATAAGGCTTTGAGTTTCTTTGAGCAGATGAAGAAGGATGGTGGCATTCCAAATTCAAATACATGGGAGGTTCTTTATGAGGGCCACATTGCAGAAAAGAGGATTTCTGATGCCCTGTTTTGCTTGAAAGAAGCTTTTATGGCTGCTGGGGGTTCAAAGAGTTGGAAACCAAAACTCTTAAACTTATCTGCATTCCTTGAGCTTTGTCAAGAGCAAGATGACATGGAAAGTGCTGAGGTTTTAATTGGATTGTTGAGGAAGTCAAAATTTAGTAAAATTAAAGTTTATGCTTCACTCATTGGCTCATCTGATGGTACCATTGACAAAGGTGAATTGTCAAGCAAGATTGATACAGAAGATAGAAGTGATGATATCGTTGACAGTGAAAACATGGATGATGGTGACTCTCAAATGTTGCTCAACCAACTAGAGTAA 1638 0.4212 MSLLPLQPQSSLHNQNLSLSSSLCYSPPLPSHHSLAAARTCCFPRLSVTCSISKIHSYGTVDYERRPIVRWNDVYRRVSLNNDPDVGSATVLNQWENQGRHLTKWELSRVVKELRKYRKYHRALEVYDWMNNRPERFRVSASDAAIQLDLIAKVRGVSSAEVFFLSLEEKLKEKRTYGALLNVYVHSRSKEKAESLLDTMRSKGYVIHPLPFNVMMTLYMNLEEYDKVDMLVSEMMEKNIELDIYTYNIWLSSCGSQGSIEKMEQVFEQMEKDPTIVPNWSTFSTMASMYIRMDQNEKAVECLRKVEGIIKGRDRIPFHYLLSLYGLVGEKDELYRVWNTYKSIFPSIPNLGYHAIISPLVKLDEIEGAEKLYEEWVSVKATYDPRIGNLLLGWYVKKGNTDKALSFFEQMKKDGGIPNSNTWEVLYEGHIAEKRISDALFCLKEAFMAAGGSKSWKPKLLNLSAFLELCQEQDDMESAEVLIGLLRKSKFSKIKVYASLIGSSDGTIDKGELSSKIDTEDRSDDIVDSENMDDGDSQMLLNQLE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01531 545 MobiDBLite consensus disorder prediction 512 545 - -
Cca01g01531 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Cca01g01531 545 PANTHER OS12G0527900 PROTEIN 45 504 - -
Cca01g01531 545 Gene3D Tetratricopeptide repeat domain 339 484 IPR011990 GO:0005515
Cca01g01531 545 Gene3D Tetratricopeptide repeat domain 103 315 IPR011990 GO:0005515
Cca01g01531 545 Pfam Pentatricopeptide repeat domain 231 290 IPR002885 -
Cca01g01531 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Cca01g01531 545 TIGRFAM PPR: pentatricopeptide repeat domain 389 419 IPR002885 -
Cca01g01531 545 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Cca01g01531 545 TIGRFAM PPR: pentatricopeptide repeat domain 245 279 IPR002885 -
Cca01g01531 545 TIGRFAM PPR: pentatricopeptide repeat domain 212 243 IPR002885 -
Cca01g01531 545 Pfam PPR repeat 389 415 IPR002885 -
Cca01g01531 545 Pfam PPR repeat 176 204 IPR002885 -
Cca01g01531 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Cca01g01531 545 PANTHER OSJNBB0038F03.9 PROTEIN 45 504 - -
Cca01g01531 545 SUPERFAMILY TPR-like 222 412 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01531 Cca-Chr1 33492414 33495020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01531 9 515 EF-hand Containing Proteins AT1G02150 58.268 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01531 - - gmx:100780408 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01531 01 33492414 33495020 Cca01g01531 01 33492414 33495020 ECH