Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0092 ATGGTCACAACAAGCACAACTTTGAAGTTCAATCAAATCCTAGCAAAAGAGAAGAAACATGAACTGCATAATAACCTTGAAGAAACACAACAAATCCATAGCCATTTCATCAAAACATGTTTGAATTTCAGTCACCATAAACTCCCTTTTCCATCACTTAAGTCCTATTCCAGCACTGAAGCAATCCAAAGCTTCCTAATAACATCTTACAACAACAACAATTGCCCACAAGAAGCAGTGAAAATCTACGCCGACATGCGTAAAGAAGACGCCGAAGTAGACAATTTCATCATACCATCTGTTCTCAAATCATGCAGCCTTATCCCTTCAACAATGCAAGGACAAGAGGTGCATGGTTTTGTGGTGAAAAGTGGATTCCAAAGTGATGCTTTTGTGTGCAATGCATTAATCATGATGTATAGTGAGGTTGGGAAATCGAAATCTGCAAGACTATTATTTGATAAGATTGATAACAAAGATGTTGTTTCTTGGAGTACAATGATTAGAAGTTATCATAGGAGTGGATTTCTTGAAGAAGCATTGAATCTTCTTAGAGATATGCATATTATGAAAGTAAAGCCTAGTGAAAGTGCAATTATAAGCACCATTCATGTCTTTGCAGAACTTGGTAACTTGAAATTGTGCAAAGCTATGCATGCTTATGTCATAAGGAATATGAACTATTATATGAAATCAGAAGCTTCTTTAAGTACTTCTTTGATAAATATGCATGTTAAATGCTCAAATTTATCTTATGCAAGAAGGGTTTTTGATGGTTTATCTGAGGCTAGTATAATTTCATGGACTGCTATGATTTCAGGCTACATTCATTTCAATGATTTATATGAAGTTACAAGACTTTTTACAAAAATGCTACAAGAGGGTATTTTTCCAAATGATGTTACAATCCTTAGTTTTGTCAAAGAATGTTGCAATGCAAAATCTCTAGAACTTGGTAAGTGTCTACATGCTTTCACCTTAAGAAATGGATTTACCATTTCACTTGTTTTAGCCACTGCTTTTATAGATATGTATGGAAAATGTGGTGATGTTATAAGTGCAAGATCTGTTTTTGACAGCACCAAGAACAAAGACTTAACAATTTGGAGTGCAATGATTTCTACTTATGCACAAAACAACACCATAGATGAAGCATTTGATGCATTTTTCCAAATGAATTGCAATGGAATAAGACCAAATGAGTTAACCATGGTTAGTCTCATTGTGTTATGTGCAAAAGTTGGATCCCTTGAAAAGGGTAAGTGGATTCATTCTTACATAAACAAAGAAGGAATCAAAGAAGATTTGGTTCTAAAAACCTCTTTAGTGGACATGTATGCAAAATGTGGAGACATAAATATGGCTTATAGAATTTTCAATGCAGCAACTATAAGAGACATTGCAATGCTAAATGCTATGATATCAGGTTTTGCAATACATGGTCATGGTTATGCAGCATTGAAACTCCTTGAAGAAACAGAATCACTAGGACTTTTCCCTAATGATATCACATTCATTGGAGCTATTCATGCTTGTAGCCATGCAGGGTTGGTGCAAGAAGGGAAAATGGTGTTCCATAAAATGGTGCATGGTTTTGGTTTGGTGCCAAAAGTTGAGCACTATGGTTGCATGGTGGATCTTCTTGGAAGAGGTGGATTACTTGATGAAGCTATGGAACTGATTCAAAACATGACTATGAAGCCAAATGATGCTGTATTAGGATCTTTTCTTGGTGCATGCAAGGTTCATAAAAATGTGAAGTTAGGAGAATGGGTTGCAAAAAAGTTTCTATCTTTGGAATCAGAAAAGTTTGGATATAATGTTCTAATGTCAAATATATATGCAGAAGCAAGTAGATGGAGTAATGTTGCTGATATAAGGAGAAGTATGAAAGATGTAGGGGCTAGTAAAGAACCTGGTGTTAGTTCCATTGAAATCAATGGTTCATTTCATGAATTTACTATGGGAGATAGGGAGCATCCAGAATCTCAAAACATTTATGAAATGATTGATGCAATGCTATGA 2025 0.3511 MVTTSTTLKFNQILAKEKKHELHNNLEETQQIHSHFIKTCLNFSHHKLPFPSLKSYSSTEAIQSFLITSYNNNNCPQEAVKIYADMRKEDAEVDNFIIPSVLKSCSLIPSTMQGQEVHGFVVKSGFQSDAFVCNALIMMYSEVGKSKSARLLFDKIDNKDVVSWSTMIRSYHRSGFLEEALNLLRDMHIMKVKPSESAIISTIHVFAELGNLKLCKAMHAYVIRNMNYYMKSEASLSTSLINMHVKCSNLSYARRVFDGLSEASIISWTAMISGYIHFNDLYEVTRLFTKMLQEGIFPNDVTILSFVKECCNAKSLELGKCLHAFTLRNGFTISLVLATAFIDMYGKCGDVISARSVFDSTKNKDLTIWSAMISTYAQNNTIDEAFDAFFQMNCNGIRPNELTMVSLIVLCAKVGSLEKGKWIHSYINKEGIKEDLVLKTSLVDMYAKCGDINMAYRIFNAATIRDIAMLNAMISGFAIHGHGYAALKLLEETESLGLFPNDITFIGAIHACSHAGLVQEGKMVFHKMVHGFGLVPKVEHYGCMVDLLGRGGLLDEAMELIQNMTMKPNDAVLGSFLGACKVHKNVKLGEWVAKKFLSLESEKFGYNVLMSNIYAEASRWSNVADIRRSMKDVGASKEPGVSSIEINGSFHEFTMGDREHPESQNIYEMIDAML* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0092 674 Pfam E motif 583 645 IPR046848 -
Lan12g0092 674 Gene3D Tetratricopeptide repeat domain 230 323 IPR011990 GO:0005515
Lan12g0092 674 Gene3D Tetratricopeptide repeat domain 324 430 IPR011990 GO:0005515
Lan12g0092 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Lan12g0092 674 TIGRFAM PPR: pentatricopeptide repeat domain 266 299 IPR002885 -
Lan12g0092 674 TIGRFAM PPR: pentatricopeptide repeat domain 162 195 IPR002885 -
Lan12g0092 674 TIGRFAM PPR: pentatricopeptide repeat domain 368 401 IPR002885 -
Lan12g0092 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Lan12g0092 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Lan12g0092 674 Pfam PPR repeat family 264 312 IPR002885 -
Lan12g0092 674 Gene3D Tetratricopeptide repeat domain 110 229 IPR011990 GO:0005515
Lan12g0092 674 Gene3D Tetratricopeptide repeat domain 440 652 IPR011990 GO:0005515
Lan12g0092 674 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 509 529 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 368 397 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 66 89 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 540 565 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 162 188 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 132 159 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 470 497 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 339 363 IPR002885 -
Lan12g0092 674 Pfam PPR repeat 440 460 IPR002885 -
Lan12g0092 674 PANTHER - 152 313 - -
Lan12g0092 674 PANTHER - 265 377 - -
Lan12g0092 674 PANTHER - 362 673 - -
Lan12g0092 674 PANTHER - 17 177 - -
Lan12g0092 674 PANTHER - 17 177 - -
Lan12g0092 674 PANTHER - 265 377 - -
Lan12g0092 674 PANTHER - 152 313 - -
Lan12g0092 674 PANTHER - 362 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0092 Lan-Chr12 1006967 1009431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0092 50 674 Glycoside Hydrolase AT3G49170 32.227 2.92e-109 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0092 - - gmx:100782031 951.044