Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0639 ATGGAAACCACAGTTCCAATTCCAACCTCAGCTGCAACTCCAACTTCATCTCTCTCTCTTTCTCTTTTCTCTTCAAACACCAACCGCACCTCTCTCCAACTCCCCTTCAACTCTAAACCTCCTCCTTCCATCATCACACAGCAACAACAACCACCACCCAATAACCCTAAACTCAAATTTGCATTTCAACTACAAAACGACGCCGTTTCGGGCAAGTCGCGAACGACGCTATTGGGAGGAGCAGAATTGGATGTGTCTAGCTTTGTGAATGTTATTGAAAGCTTGGGTGATGCAAATGCGGTTCAAGAAGGGTTTAAGGTTCATGCCATTTTGGTTAAGAACGGTTATTTTGATGCTAGTTTATATATTAAGGTCTGTTTGGTTAGAATGTATTTTAGGTGTGGGAAAGTTGAGCTTGCGCGGAGGGTGTTTGATGAAAGTTCTGAGAGAGATGTTTCTTTGTGGGGTGCCATGGTTGCTGGTTTTGCACACCATGGGATGCGGATTGAAGCATTGCAGTATGTGAGGTTGATGGTAGATGAAGGAATAATGCCGAATTCGGCTTTGATGATGGGTGTTCTTCCCTTAGTTGGGGAGCTTGGCGCATTGCGGATAGGTCAAGAGGCTCATGCTTACTTAGTGAAGAAGAAATTTTACTATGAGCAAGTGCGAATTCGAACTGCATTGGTTGATATGTACAGTAAATGTGGGGATGTTGGTTCGGGGAGGCGAGTTTTGTCTAGCTTGGTAGAGAGAGGTATAAGTTGTTGGAGTGCTCTGATTGCGGGTTCTGTCTCGAGTGGGGGGTTTCAAAAGGCGGTGAAGTCCATGGTTAGAATGCAGCGAGAAGGGTTCCGGCCTAGTCATGTCAGTGTTGCTTCTATCCTTTCGGTTTGTGCACAGTCGAGGGCTCTGAAACGGGGGAAGGAGATTCATGCTTATGCTTTAAAACATTGGTTTCTGCCTCATGTCTCTATAGCTTCTTCGTTGATGGTGTTGTACTCTAAGTGTGGTTTGATTGAGTATTGTAGAAACCTATTTGATGGTATGGAACGAAGGAATGTGATCCTGTGGACAGCTATGTTTGATGCATATGTGGAAAATGGGTGTTTTCCTGAAGCATTTGGTGTCCTAAGGTCAATGCAATTGACAGAGTATAGGCCGGACACAGTTACCATGGCGAGGATGTTAAGTCTTTGCAGCAAACTAAAACTTGTAAAGCTTGGTAAGGAGATTCATGTGCAGGTATTGAAAAGAGATTTTGCATCAGTGCATTATGTTTCTGCAGAACTTATCAATATGTATGGTACCTGTGGACTCATTGATAAGGCGAATTTGGTATTTGATGCAGTGCTTGATAAAGGTTCAATGACATGGACTGCTCTTATAAGGGCATATGTATATAAAGAATTTTATAAAGATGCAATTGACCTCTTTGATGACATGATTTCAAAGGGTTGTGCTCCGAACCGCTTTACTTTTGAAGCTGTTCTTTCTGTATGTGATAAAGCTGGTTTTGTTGAAGAGGCATTTAGGATCTTCAATTTACTGTCAAGGTATAAAGTTGAAGCATCCAAGGAACACTGCATTTCAATGATTCAGCTTCTTACGCGTTATGGTAAACTAGATGAGGCTCAAATATTTGTAGAAATGAGTTCTTTGTTATAG 1668 0.4227 METTVPIPTSAATPTSSLSLSLFSSNTNRTSLQLPFNSKPPPSIITQQQQPPPNNPKLKFAFQLQNDAVSGKSRTTLLGGAELDVSSFVNVIESLGDANAVQEGFKVHAILVKNGYFDASLYIKVCLVRMYFRCGKVELARRVFDESSERDVSLWGAMVAGFAHHGMRIEALQYVRLMVDEGIMPNSALMMGVLPLVGELGALRIGQEAHAYLVKKKFYYEQVRIRTALVDMYSKCGDVGSGRRVLSSLVERGISCWSALIAGSVSSGGFQKAVKSMVRMQREGFRPSHVSVASILSVCAQSRALKRGKEIHAYALKHWFLPHVSIASSLMVLYSKCGLIEYCRNLFDGMERRNVILWTAMFDAYVENGCFPEAFGVLRSMQLTEYRPDTVTMARMLSLCSKLKLVKLGKEIHVQVLKRDFASVHYVSAELINMYGTCGLIDKANLVFDAVLDKGSMTWTALIRAYVYKEFYKDAIDLFDDMISKGCAPNRFTFEAVLSVCDKAGFVEEAFRIFNLLSRYKVEASKEHCISMIQLLTRYGKLDEAQIFVEMSSLL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0639 555 TIGRFAM PPR: pentatricopeptide repeat domain 458 490 IPR002885 -
Amo19g0639 555 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Amo19g0639 555 TIGRFAM PPR: pentatricopeptide repeat domain 155 186 IPR002885 -
Amo19g0639 555 Pfam PPR repeat family 455 501 IPR002885 -
Amo19g0639 555 Gene3D Tetratricopeptide repeat domain 74 204 IPR011990 GO:0005515
Amo19g0639 555 Gene3D Tetratricopeptide repeat domain 304 419 IPR011990 GO:0005515
Amo19g0639 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Amo19g0639 555 MobiDBLite consensus disorder prediction 31 52 - -
Amo19g0639 555 Gene3D Tetratricopeptide repeat domain 426 554 IPR011990 GO:0005515
Amo19g0639 555 Gene3D Tetratricopeptide repeat domain 217 303 IPR011990 GO:0005515
Amo19g0639 555 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 80 552 - -
Amo19g0639 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Amo19g0639 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Amo19g0639 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 357 382 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 256 285 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 328 355 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 227 254 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 126 150 IPR002885 -
Amo19g0639 555 Pfam PPR repeat 154 183 IPR002885 -
Amo19g0639 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Amo19g0639 555 PANTHER - 80 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0639 Amo-Chr19 9914916 9916722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0639 88 549 Glycoside Hydrolase AT3G49170 27.079 4.28e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0639 - - ahf:112777871 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0639 19 9914916 9916722 Amo14g3641 14 141123734 141125821 PCT