Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00542 ATGATGATGCCCCTTCAATCTTCTTTGAACAACCAAAACATTTCTCTTTCTCTTTCATCTTCCCTTTACTATTCTTCACCACTTCCCTTGAAGCTCTCTACTCTCACCACACAAAGGGTGTGTTTTCAGAGACTCTCTATCACATGTTCCATCTCAAAGATCCACAGTTATGGGACTGTGGACTATGAACGCAGACCCATTATAAGGTGGAATGATGTATACAGGAGGATATCGTTGATGCAAAATCCTGAATTGGGTTCTGCCACTGTGTTGAATCAGTGGGAGAATGAAGGGAAGAACCTCACAAAATGGGAACTTTGTAGAGTGGTCAAAGAGTTGAGGAAGTATAGGAGACATGAAAGGGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAGTATCTGCGAGTGACGCAGCAATTCAGTTAGATCTTGTTGCAAAAGTTCGTGGAGTTTCTAGTGCAGAAAGATTTTTTCTGAACCTGACTGATAAGTTAAAAGACAAGAGGACACATGGTGCCCTATTGAATGTATACGTGCATTCTAAATCAAAGGAAAAGGCAGAATCTTTACTTGACAAAATGAAGAGTAAAGGGTATGTAATACATTCACTGCCCTTTAATGTAATGATGACTCTGTACATGAACCTTAAGGAATACGATAAAGTTGACATGTTGGTTTCAGAAATGAAAGAAAAAAACATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGTTCAACAGAAAAGATGGAAGAAGTGTTTGAACAGATGGCAAAGGATCCTGCCATTGTCCCTAACTGGACTACATTCAGCACAATGGCTACAATGTACATTAAGATGGATATGTTTGAAAAAGCAGAAGAGTGCTTAAGGAAGGTAGAGAGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTTAGTTTATATGGAAGTGTTGGAAACAAGGATGAAGTTTATCGTGTATGGAATACCTATAAATCAATTTTTCCAACTATACCAAACTTGGGATACCATGCTATAATTTCTTCTCTGGTCAGAATGAATGATATTGAGGGTGCAGAAAAACTTTTTGAGGAATGGCTTTCAGTAAGGTCATCTGATGATGCTAGAGTAGGAAACCTTCTTATTGGCTGGTATGTTAAAAATGGAAATATAGATAAAGCTTTGAGTTTATTTGAGCATATGACTGAAGGTTGTGGATCTCCAAATTCAAATACATGGGAGCTTCTTTCTGAGGGTCATATTGCAGAAAAGAGGATTTCTGAGGCCTTGTCCTGCTTGGAAAAGGCTTTCTTGACTGATGGTTCAAAGAGTTGGAGACCGAAACCCTTAAACTTGTCTACATTCTTTAAACTCTGTCAAGACCAAGATGACAAGGCTAGCGCTGAGGTTTTAATTGGTTTGTTGAGGAAGTCAGGATTTCTTGACAATGAATCTTATGTATCACTCATTGGCTTACCTGATGCTACCATTGGCAAAGGTGAATTGTCTAGCAAGAATGATACAGAAGATAAAACTGATGATATTGTTGACAGCGAAAAAGTGGGTGATGACTCTCAAATGTTGTTCAACCAAATGGAGAGCAGTTTTTGA 1638 0.3816 MMMPLQSSLNNQNISLSLSSSLYYSSPLPLKLSTLTTQRVCFQRLSITCSISKIHSYGTVDYERRPIIRWNDVYRRISLMQNPELGSATVLNQWENEGKNLTKWELCRVVKELRKYRRHERALEVYDWMNNRPERFRVSASDAAIQLDLVAKVRGVSSAERFFLNLTDKLKDKRTHGALLNVYVHSKSKEKAESLLDKMKSKGYVIHSLPFNVMMTLYMNLKEYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSTEKMEEVFEQMAKDPAIVPNWTTFSTMATMYIKMDMFEKAEECLRKVESRIKGRDRIPFHYLLSLYGSVGNKDEVYRVWNTYKSIFPTIPNLGYHAIISSLVRMNDIEGAEKLFEEWLSVRSSDDARVGNLLIGWYVKNGNIDKALSLFEHMTEGCGSPNSNTWELLSEGHIAEKRISEALSCLEKAFLTDGSKSWRPKPLNLSTFFKLCQDQDDKASAEVLIGLLRKSGFLDNESYVSLIGLPDATIGKGELSSKNDTEDKTDDIVDSEKVGDDSQMLFNQMESSF* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00542 545 Gene3D Tetratricopeptide repeat domain 350 458 IPR011990 GO:0005515
Rops4g00542 545 FunFam Pentatricopeptide repeat-containing protein 84 228 - -
Rops4g00542 545 FunFam Pentatricopeptide repeat-containing protein 229 349 - -
Rops4g00542 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Rops4g00542 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Rops4g00542 545 Pfam PPR repeat 388 412 IPR002885 -
Rops4g00542 545 Pfam PPR repeat 175 203 IPR002885 -
Rops4g00542 545 Pfam PPR repeat 352 376 IPR002885 -
Rops4g00542 545 SUPERFAMILY TPR-like 281 446 IPR011990 GO:0005515
Rops4g00542 545 NCBIfam pentatricopeptide repeat 175 205 IPR002885 -
Rops4g00542 545 NCBIfam pentatricopeptide repeat 388 418 IPR002885 -
Rops4g00542 545 NCBIfam pentatricopeptide repeat 211 242 IPR002885 -
Rops4g00542 545 NCBIfam pentatricopeptide repeat 244 277 IPR002885 -
Rops4g00542 545 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 272 IPR002885 -
Rops4g00542 545 Gene3D Tetratricopeptide repeat domain 273 349 IPR011990 GO:0005515
Rops4g00542 545 Gene3D Tetratricopeptide repeat domain 103 272 IPR011990 GO:0005515
Rops4g00542 545 PANTHER OS12G0527900 PROTEIN 63 500 - -
Rops4g00542 545 Pfam Pentatricopeptide repeat domain 230 289 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00542 Rops-Chr4 14947955 14952614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00542 3 513 EF-hand Containing Proteins AT1G02150 61.328 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00542 - - gmx:100780408 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00542 4 14947955 14952614 Rops4g00542 4 14947955 14952614 ECH