Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0921 ATGTTCTGCGCGCGTCCCACCAATACGGTGACGCATCCGTCTTTCAAATCTTCTTCTGAAATGCAAACCTCCATTTCCCCTTTTCTCTCTCTTCACCCTCAGTCTCACTCGTTCCTTCCTTCCACGCGCCACACTCTCTCACTCTCCGCGCCACAAAGCTACGCGCCTCCCTCTCCGCCGCCGCTACTGATCCACCCCAGACCGCCGCGTTTCGATTATGCCCCTTCCTACGAGACGCGTCCGAACTGTATATACCTCAAGCGCAGGAAGGTAGAACTTGCGCGCCAAGTGTTTGATGAAATTCCCAAACGAGACGTTAATGCGTGGAGTACCATGATCACCGGTTTCGCGCGCAATGGAATGCTGAGGGAAGTTTGGGAGTACACGAGGTTGATGTTAGAGGAAGGAATAAATCCAAATTTGGTGGTAATGACAGTTATTCTTGATGTCATAGGAAAATTTGGTGGTCGAAATTTAGGTAGGGAGGCTCATGGTTTTGTGTTGAAGATGAATATTTATTACAAGGAATTGTCGATTCAATCGGCGTTGATTGATATGTATTGGAACTGTGGTGATGTTGGCTCAGGGAGCCGGGTTTTGTATAGTGTGATGAAGAGGTATGGTGATTGTTGGATTGGATTGATGTCGGGTAGACTTGAGGTGGAAATGAGGTCTATTGTTCGGTTGAAGAGGTTCCGGCCTGGTGCTGTTGCGGTTGCTTCTTTGCTTCCGATTTGTGCACAATTGAGGGCTCTGAAGCAAGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGGCTTCTGCCTAATGTGCCGATAGTGTCTTCCTTGATGGTGTTGTACTCCAAGTGTGGCATGATTGAGTATTCCTTGAGATTGTTTGATGGAATGGAACAGAAGAACGTGGTTTCATGGACTGCCATGATTGATTCGTGTGTTGAAAATGGACATTTGTGTGAAGCAACTGGTGTCATGAGGTCAATGGTATTGACAGAGCATAGACCGGATACAGTTACCGTGGCTAGGATGTTGCGTGTTTGTCAGGAGCTGAAAGTTTTAAAGCTTGGGAAGGAGGTTCATGGGCAGGTATTGAAAAGGGGGTTTGTGTCGGTCCATTATGTTGCTGCCGAACTGATTGATATGTATGGAATTTGTGGATATGTTGATAAGGCGAAGTTGGTGTTTCGTGCAATTCCTGTAAAAGGTTCAATGGCATGGAGTGCTCTTATAAGGGCCTATGGGTACAAAGAATGGTATCAAGAAGCAGTTGACCTTTTTGATAACATGATATCAAATGGTTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTCTATCTATTTGTGATAGAGCTGGATTTGTTGAAGATGCTTTTAGGATATTTGATTTGATGTCCAGATATAAAATTGATGCATCCGAGGAACACTGCACTTGCATGATTCGACTTCTTACCCGCTATGGCAAACTAGATGAGGTTCAAAGATTTGTTGAAATGAGTTCTTCCTTATAG 1509 0.4506 MFCARPTNTVTHPSFKSSSEMQTSISPFLSLHPQSHSFLPSTRHTLSLSAPQSYAPPSPPPLLIHPRPPRFDYAPSYETRPNCIYLKRRKVELARQVFDEIPKRDVNAWSTMITGFARNGMLREVWEYTRLMLEEGINPNLVVMTVILDVIGKFGGRNLGREAHGFVLKMNIYYKELSIQSALIDMYWNCGDVGSGSRVLYSVMKRYGDCWIGLMSGRLEVEMRSIVRLKRFRPGAVAVASLLPICAQLRALKQGKEIHAYALRHWLLPNVPIVSSLMVLYSKCGMIEYSLRLFDGMEQKNVVSWTAMIDSCVENGHLCEATGVMRSMVLTEHRPDTVTVARMLRVCQELKVLKLGKEVHGQVLKRGFVSVHYVAAELIDMYGICGYVDKAKLVFRAIPVKGSMAWSALIRAYGYKEWYQEAVDLFDNMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMSRYKIDASEEHCTCMIRLLTRYGKLDEVQRFVEMSSSL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0921 502 Gene3D Tetratricopeptide repeat domain 221 374 IPR011990 GO:0005515
Gso3g0921 502 Gene3D Tetratricopeptide repeat domain 375 501 IPR011990 GO:0005515
Gso3g0921 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Gso3g0921 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Gso3g0921 502 Gene3D Tetratricopeptide repeat domain 82 217 IPR011990 GO:0005515
Gso3g0921 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gso3g0921 502 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 84 502 - -
Gso3g0921 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Gso3g0921 502 Pfam PPR repeat family 403 446 IPR002885 -
Gso3g0921 502 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Gso3g0921 502 TIGRFAM PPR: pentatricopeptide repeat domain 108 140 IPR002885 -
Gso3g0921 502 TIGRFAM PPR: pentatricopeptide repeat domain 405 437 IPR002885 -
Gso3g0921 502 Pfam PPR repeat 303 329 IPR002885 -
Gso3g0921 502 Pfam PPR repeat 108 137 IPR002885 -
Gso3g0921 502 Pfam PPR repeat 275 302 IPR002885 -
Gso3g0921 502 PANTHER - 84 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0921 Gso-Chr3 32805351 32808185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0921 92 497 Glycoside Hydrolase AT3G49170 24.821 1.37e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0921 - - gmx:100780947 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0921 3 32805351 32808185 Gso9g2007 9 44552443 44554781 PCT