Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0090 ATGATTGTTCAATTATCTTTGAATTTGAACATTCATCAAAACAACTTTTCTTATTCTCTTCCTCTTCGTCGTTTCCACACTCTTTCTCTTTCAAATCACAATAACAATAGACCCATTTCCCATAGTTGGAAAGAAGTATGCAGAAGAATTTCTTCATATAATGTTCCTTATTTGATTTCTGATGCTACCACTGTTTTGGATCAATGGGAAGTTGAAGGAAATACTCTCACTAAATGGGAACTTGGTCAAATCCTTAGAGACATGAGGAAACGCAACAAACATCACCCTGCTCTTCAGGTATGTAACTGGATGAACAACAGAGAAGAGAGGTTTGGTTTATCTGCAAGTGACGCTGCGGTTCAGATAGATCTAATTTCCAAAGTTCATGGGGTTGCTAGTGCGGAAGAATATTTTCGGAGGCTGAAAAACGTGTTAAAAGACAGGAAGACTTACTGTTCCCTTTTGAATGTATATGCGCACTCTAGACTGAAGGAAAAGGCGGAATCTTTATTTGTCGCAATGAGGAGCAAAGGGTATGCAATAAATTCACTTCCATTTAATGTGATGATGACTATGTACTTGAACCTTAAGGAATATGATAAAGTCGATACGTTGGTTTCAGAAATGATAGAAGCAAATGTAAAGCTAGATCTTTATTCGTACAACATCTGGTTATCTTCTTGTGGATCTCAAGGATTGGCAGAAAAGATGGAACAAACGTATGAATTGTTGACAAAGGACCGAACTATTGTCCCTAACTGGACTACGTTCAGCACATTGGCCAAATCATACACTAAGATGGGTCACTTTGAAAAAGCAGAAGAATACATAAGAAAGGTTGAAACTACCATTGAAGGTCGAAATAGAATACCTTTTCATTATCTCCTTACTTTATACGGAAATATTGGTAAGAAAGAGGAAGTTTACCGCGTATGGAAAATTTATAAATTAATTTTTCGCAGGGTAACAAACTTGGGATACCTTGCTTTTATGTCTTCTCTGGTAAGATTGGGTGATATTGAGGGTGCAGAAAATCTTTACGAGGAATGGCTTTCGGTAAAGTCATCTTATGATTCTAGAATAGGAGACCATCTTCTAGGCTGGTATGCTAAGAAAGGAGATACAGATAAAGCTCTCGGAATCTTTAAGCAGATGGCGAAATCGGGTCAAAATCTGTATTCAAGTACATGGGAGATTCTCTCTGAGGTACATATTTCTAATCAGAGAATTTCTGAGGCATTGTCCTGCTTGAAAGAAGCATTTATGGCTGGTGCTCCGAAGACTTGGAGACCAAACCCCGTAAAAGTGTCTGCGTTCTTCGAGCTTTGTCGCAAGCAAGATGACAAGGGAAGCGCCGAGACTTTAATCGGGTTGTTGAGACAGTCAGGATTTCTTGAAGATGAAGTTTATGCATCACTCATTGGCTTATCTGATGGTGCCATTGGTAAAGGTGGATTATCAATCAAGATTGATACAGTGGATAGAACAGAAAATATCTATGAAGATGAAAACACTGAAGTTATGTTCAACCAACTAGAGGGTAGCTTTTGA 1551 0.3823 MIVQLSLNLNIHQNNFSYSLPLRRFHTLSLSNHNNNRPISHSWKEVCRRISSYNVPYLISDATTVLDQWEVEGNTLTKWELGQILRDMRKRNKHHPALQVCNWMNNREERFGLSASDAAVQIDLISKVHGVASAEEYFRRLKNVLKDRKTYCSLLNVYAHSRLKEKAESLFVAMRSKGYAINSLPFNVMMTMYLNLKEYDKVDTLVSEMIEANVKLDLYSYNIWLSSCGSQGLAEKMEQTYELLTKDRTIVPNWTTFSTLAKSYTKMGHFEKAEEYIRKVETTIEGRNRIPFHYLLTLYGNIGKKEEVYRVWKIYKLIFRRVTNLGYLAFMSSLVRLGDIEGAENLYEEWLSVKSSYDSRIGDHLLGWYAKKGDTDKALGIFKQMAKSGQNLYSSTWEILSEVHISNQRISEALSCLKEAFMAGAPKTWRPNPVKVSAFFELCRKQDDKGSAETLIGLLRQSGFLEDEVYASLIGLSDGAIGKGGLSIKIDTVDRTENIYEDENTEVMFNQLEGSF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0090 516 SUPERFAMILY TPR-like 134 353 IPR011990 GO:0005515
Lan12g0090 516 TIGRFAM PPR: pentatricopeptide repeat domain 365 389 IPR002885 -
Lan12g0090 516 TIGRFAM PPR: pentatricopeptide repeat domain 186 217 IPR002885 -
Lan12g0090 516 TIGRFAM PPR: pentatricopeptide repeat domain 150 182 IPR002885 -
Lan12g0090 516 TIGRFAM PPR: pentatricopeptide repeat domain 219 254 IPR002885 -
Lan12g0090 516 Pfam Pentatricopeptide repeat domain 205 265 IPR002885 -
Lan12g0090 516 Gene3D Tetratricopeptide repeat domain 199 285 IPR011990 GO:0005515
Lan12g0090 516 Gene3D Tetratricopeptide repeat domain 287 496 IPR011990 GO:0005515
Lan12g0090 516 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Lan12g0090 516 PANTHER OSJNBB0038F03.9 PROTEIN 31 477 - -
Lan12g0090 516 SUPERFAMILY TPR-like 253 420 IPR011990 GO:0005515
Lan12g0090 516 Pfam PPR repeat 327 351 IPR002885 -
Lan12g0090 516 Pfam PPR repeat 150 178 IPR002885 -
Lan12g0090 516 Pfam PPR repeat 365 389 IPR002885 -
Lan12g0090 516 Gene3D Tetratricopeptide repeat domain 60 198 IPR011990 GO:0005515
Lan12g0090 516 PANTHER OS12G0527900 PROTEIN 31 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0090 Lan-Chr12 989765 993679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0090 37 478 EF-hand Containing Proteins AT1G02150 53.846 3.36e-170 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0090 - - gmx:100780408 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0090 12 989765 993679 Lan1g0931 1 20000597 20005671 LSH