Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed2g1733 ATGAGTCTCCTTCGAATTCAATCCTCTCTGCACAACCAAACCCTCTCACTCTCTTTCTCATCTTCCCTCTCCTCCTCCTCCTCACTTTCCTTCAACCACTCTTCTTCTTCTTCCTGTCTCTTCCCTCGGCGCCTCTCGGTGGCGACGTGTTCCATCTCGAAGATCCACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATCGTGCGCTGGAACGACGTCTACCGCAGGATATCGCTCAACCCAAACCCCCAACTTGGCTCCGCAGAAGTTCTCAATCAATGGGAGAACGAAGGGAGGCACCTCACTAAATGGGAACTTTCCAGAGTCGTCAAGGAGTTGAGGAAGTACAAGAGATTCAGAAGAGCCCTCGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCCGAGAGTGATGCAGCAATTCAGTTGGATCTAATTGCAAAAGTGCGTGGAGTTTCTAGTGCGGAAGCATTCTTTCTGAGTCTGGATGATAAGTTAAAAGATAAGAAGACATATGGTTCCCTGTTGAATGTATATGTGCATTCTAGATTGAAGGAAAAGGCAGAATCTTTACTTGATACAATGAGGAGTAAAGGCTATGTAAGCCATGCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTTAGGGAATATGTTAAAGTTGATATGTTGACTTCTGAAATGATGGGGAAAAACATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGGTCGGTAGAAAAGATGGAACAGGTGTTTCAACAGATGGAAAAGGATCCTACCATTGTCCCTAACTGGTCTACATTCAGCACAATGGCATCAATGTACATTAGGATGGATCAGAATGAAAAAGCGGAAGCGTGCTTAAGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATAGCTTTTCATTATCTCTTGAGTCTATATGGAAGTGTTGGAAAGATAGACGAAGTGTATCGTGTGTGGAATACGTACAAATCAATTTTTCCAAGTATACCAAACTTGGGATACCATGCTATCATTTCTTCTCTGGTTAAATTGGAAGATATTGAGGGTGCAGAAAAACTTTATGAGGAATGGATTTCAGTGAAGTCAAGTTATGATCCTAGAATTGGAAACCTTCTCATAGGCTGGTATGTTAAGAAAGGTAACACTGATAAAGCTTTGAGTTTCTTTGAGAACATGACGAGTGATGGCTGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGAAGATGCAAGTATTCCTGAAGCCCTGTCCTGCTTGAAAGAAGCTTTTATGGCTGTTGCTGGTTCAAAGAGTTGGAGACCAAAGCCATCAAACTTGTTTGCATTCATTGAGCTTTGTCAAGAGCAAGATGACATGGAAAGCGCTGAGGTTTTAATTGAACTGCTGAGGCAGTCAAAATTTAGTAAAAACAGAGTTTATGCATCTCTCATTGGCTCATCTGATGGTACCATTGACAATGGTGAATTGCCAAGCAAGATTGATACGGCTGATAGAACTGATGATGCCTATGACAGTGAAAACATGGATGGTGACTCTCAAATGTTGTTGAACCAACTAGATAGTAGCTTTTGA 1644 0.4203 MSLLRIQSSLHNQTLSLSFSSSLSSSSSLSFNHSSSSSCLFPRRLSVATCSISKIHSYGTVDYERRPIVRWNDVYRRISLNPNPQLGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFRRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAFFLSLDDKLKDKKTYGSLLNVYVHSRLKEKAESLLDTMRSKGYVSHALPFNVMMTLYMNLREYVKVDMLTSEMMGKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFQQMEKDPTIVPNWSTFSTMASMYIRMDQNEKAEACLRKVEGRIKGRDRIAFHYLLSLYGSVGKIDEVYRVWNTYKSIFPSIPNLGYHAIISSLVKLEDIEGAEKLYEEWISVKSSYDPRIGNLLIGWYVKKGNTDKALSFFENMTSDGCIPNSNTWEILSEGHIEDASIPEALSCLKEAFMAVAGSKSWRPKPSNLFAFIELCQEQDDMESAEVLIELLRQSKFSKNRVYASLIGSSDGTIDNGELPSKIDTADRTDDAYDSENMDGDSQMLLNQLDSSF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed2g1733 547 Gene3D Tetratricopeptide repeat domain 349 516 IPR011990 GO:0005515
Aed2g1733 547 MobiDBLite consensus disorder prediction 515 529 - -
Aed2g1733 547 PANTHER OS12G0527900 PROTEIN 37 504 - -
Aed2g1733 547 Pfam PPR repeat 353 377 IPR002885 -
Aed2g1733 547 Pfam PPR repeat 176 204 IPR002885 -
Aed2g1733 547 Pfam PPR repeat family 389 429 IPR002885 -
Aed2g1733 547 Pfam Pentatricopeptide repeat domain 232 290 IPR002885 -
Aed2g1733 547 MobiDBLite consensus disorder prediction 510 534 - -
Aed2g1733 547 PANTHER OSJNBB0038F03.9 PROTEIN 37 504 - -
Aed2g1733 547 SUPERFAMILY TPR-like 276 410 IPR011990 GO:0005515
Aed2g1733 547 Gene3D Tetratricopeptide repeat domain 87 254 IPR011990 GO:0005515
Aed2g1733 547 Gene3D Tetratricopeptide repeat domain 255 348 IPR011990 GO:0005515
Aed2g1733 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Aed2g1733 547 TIGRFAM PPR: pentatricopeptide repeat domain 389 419 IPR002885 -
Aed2g1733 547 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Aed2g1733 547 TIGRFAM PPR: pentatricopeptide repeat domain 245 279 IPR002885 -
Aed2g1733 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Aed2g1733 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed2g1733 Aed-Chr2 21925562 21929313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed2g1733 6 513 EF-hand Containing Proteins AT1G02150 59.528 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed2g1733 - - gmx:100780408 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed2g1733 2 21925562 21929313 Aed2g1733 2 21925562 21929313 ECH