Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0474 ATGTTCAGCGCGTGTCCCACCAACGCGGCGACGCGTCCATGCTTCAAATATTCTTCTGAAATTCAATCCTCTCTCTCTCTCCATCCTCACTCGTTCCTTCTAAATCCCGCCACGCGCCACTCTCTCTCACTCTCCACGCGACAAAACCACGCGCCTCCCTTGCCTCCGCCGCCGCGTTTGGATTACACCCCTCCCAACGAGACGCGTCTGAACAACTTGTACCTCAAGCGCGGCAAAGTCGAGTTTGCGCGCCTAGTGTTTGATAAAAGTCCCAAACGAGACGTTAATGCATGGAGGTGGAGTACCATGATTACCCGTTTCGCGCGCAATGGAATGATAAAAGAAGTTTTGGGGTATACGAGGTTGATGTTGGTAGAGGGAATAAATCCAAGTTTGGTTTTAATGACTGTTATTCTTGATGTTATAGGGAAAGCTGGTGCACGAAACTTGGGTAGAGAAGCTCATGGTTTTGTGGTGAAGAATATGTATTTCAAGGAATTGTCGATTCTAACCGCATTGATCGATATGTATCATAAGTGTGGCGATGTTGGGTCGGGGAATCGAGTTCTGTTTAGTGTGATGAAGTGGAAAGGAGATTTTTGGATTGGATTGGTTTCGGGGAGACTTGAGGTTCAAATGAGATCTGTGATTCGGTTGAAGAGGTTCCGACCTGGTGCTGGTGCGGTTGCCTCTTTACTTCCCATTTGTGCACAGTTGAGGGCTCTGAAGCAAGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGGCTTTTGCCTAATGTGCCAATCGTGTCTTCTTTGATGGTGTTGTACTCTAAGTGCGGTGAGATTGAGTATTCCATTAAACTTTTTGATAAAATGGAGTCGAAGAATGTGGTTTCTTGGACTGCCATGATTGATTCATGCATTGAGAATGGGGGTGTGTGTGAAGCCCTTGGTGTCATGAGGTCAATGACATGGATGACCGAGCATAAGCTGGATACTGTTACCATGGCTAGGATGCTACATGTGTGTGGGGAGATGAAAGCTTTAAAGCTTGGGAAGGAAGTTCACGGACAAGTATTGAAAAGGGGTTTTGCATCAGTCCATTATGTTGCTGCGGGACTCATTGATATGTATGGGATTTGTGTAGATATTGATAAAGCAAAGTTGGTATTCAGTGTGGTTCCTGATAAAGGTTCAATGGCATGGAGTGCTCTTATAAGGGCCTATGGGCATAAGGAATGGTATCAGGAGGCAGTTGATCTTTTTGATGACATGATTTCAAATGGTTGCTCTCCGAATCGCTTCACTTTTGAAGCTGTTCTATCTATATGTGATAGGGCTGGATTTGTTGAAGATTCTTTTAGGATCTTTGATTTGATGTCGAGATATAAAATTGAAGCATCCAAAGAACACTGCACTTGCATGATTCGACTCCTTACCCGCTATGGTAAACTAGACGAGGCTCTAAGATATTTAGAAATGAGTTCTTCCTTATAG 1482 0.4453 MFSACPTNAATRPCFKYSSEIQSSLSLHPHSFLLNPATRHSLSLSTRQNHAPPLPPPPRLDYTPPNETRLNNLYLKRGKVEFARLVFDKSPKRDVNAWRWSTMITRFARNGMIKEVLGYTRLMLVEGINPSLVLMTVILDVIGKAGARNLGREAHGFVVKNMYFKELSILTALIDMYHKCGDVGSGNRVLFSVMKWKGDFWIGLVSGRLEVQMRSVIRLKRFRPGAGAVASLLPICAQLRALKQGKEIHAYALRHWLLPNVPIVSSLMVLYSKCGEIEYSIKLFDKMESKNVVSWTAMIDSCIENGGVCEALGVMRSMTWMTEHKLDTVTMARMLHVCGEMKALKLGKEVHGQVLKRGFASVHYVAAGLIDMYGICVDIDKAKLVFSVVPDKGSMAWSALIRAYGHKEWYQEAVDLFDDMISNGCSPNRFTFEAVLSICDRAGFVEDSFRIFDLMSRYKIEASKEHCTCMIRLLTRYGKLDEALRYLEMSSSL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0474 493 MobiDBLite consensus disorder prediction 44 65 - -
Pvu10g0474 493 Pfam PPR repeat family 394 437 IPR002885 -
Pvu10g0474 493 PANTHER - 68 493 - -
Pvu10g0474 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Pvu10g0474 493 Pfam PPR repeat 265 292 IPR002885 -
Pvu10g0474 493 Pfam PPR repeat 100 128 IPR002885 -
Pvu10g0474 493 Pfam PPR repeat 293 318 IPR002885 -
Pvu10g0474 493 Pfam PPR repeat 467 488 IPR002885 -
Pvu10g0474 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Pvu10g0474 493 TIGRFAM PPR: pentatricopeptide repeat domain 100 131 IPR002885 -
Pvu10g0474 493 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Pvu10g0474 493 Gene3D Tetratricopeptide repeat domain 215 367 IPR011990 GO:0005515
Pvu10g0474 493 Gene3D Tetratricopeptide repeat domain 67 214 IPR011990 GO:0005515
Pvu10g0474 493 Gene3D Tetratricopeptide repeat domain 368 492 IPR011990 GO:0005515
Pvu10g0474 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Pvu10g0474 493 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 68 493 - -
Pvu10g0474 493 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0474 Pvu-Chr10 6933195 6935672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0474 70 487 Glycoside Hydrolase AT3G49170 25.231 4.73e-44 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0474 - - gmx:100780947 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu10g0474 10 6933195 6935672 Pvu8g0492 8 4279652 4281676 PCT