Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0148 ATGATGACTGCTACGCCTCTTCAAATTCAATCTTCTCTACAAAACCAAAACGTTTCTCTATCACTTTCATCTTCCCTCTGCTATTCTCATACCCTTCCATTCAAACAAAGGGTCAATGTGTTTTACACTGACAGTGGAATTGGAGGAAGAGTTTCTGTGACTTGTTCAATTTCAAAGATTCACAATTATGGTACAGTTGATTATGAGCGAAGACCCATTGTGAAATGGAATGCTGTATATAAGAGAATCTCTATGATGGAGAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATAAGTGGGAGAATGAAGGCAAGAATCTCACTAAATGGGAGCTTTGTAGAGTTGTTAAAGAGTTGAGAAAATACAGAAGACATGCAAGAGCTCTTCAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAATATCTGCAAGTGACGCTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAGGATTTTTTCTGAACCTAACTGATGATTTAAAAAACAAGAGGACATATGGTGCCCTCTTGAATGCATATGTTCATTCTAGATCAAAAGAGAAGGCTGAATCTTTACTCGACGTAATGAGGAGTAAAAGGTACTTAATACATTCACTACCGTTTAATTTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTATCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACATGTTTTTGAACAGATGTCGACGGATCCTACCATTACTCCTAACTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAAGGTCGAGGGTAGAATATTAGGTCGAGATCGAGTACCTTTTCATTATCTCCTGAGTTTGTACGGAAGTGTTGGAAACAAGGACGAAGTTTACCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCTAACTTGGGATACCATGCTATTATTTCTTCTCTCGTAAGAATGGACGATATTGAGGGTGCAGAAAAGCTTTACGAGGAATGGGTTTCTGTAAGGCCGTCCGATGATTCTAGAATAGGAAACCTTCTCATAAGCTGGTATCTTAAGAAAGGCAACTCAGATAAAGTTTCGAGTTTCTTTGAGCATATGACTGAAGGTGGTGGATGTCCAAATTCGACTACATGGGAGCTTCTTTTTGAGGGTCATATTGCCGAAAAGAGGGTTTCTGAGGCGCTTTCATGCTTGGAAAAAGCTTTTATGACTAGTGGCTCAAAGAGTTGGAAACCCAAGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACATGGAGAGCGCCGAGGTTTTAATTGAGTTGTTGAGGAAGTCAGGATACCATAACGATGAAGCGTATGCGTCACTCATTAGCAAAGATGAACTGTCAAGCAGGATTGAAAGAATTGATGATGGTGACAGTGAAAACATGGATGATGATGACTCTCAAGTGTTGTTCAACCAAGTAGATAGTAGCTTTTGA 1626 0.3856 MMTATPLQIQSSLQNQNVSLSLSSSLCYSHTLPFKQRVNVFYTDSGIGGRVSVTCSISKIHNYGTVDYERRPIVKWNAVYKRISMMENPELGSASVLNKWENEGKNLTKWELCRVVKELRKYRRHARALQVYDWMNNRPERFRISASDAAIQLDLIARVHGVSSAEGFFLNLTDDLKNKRTYGALLNAYVHSRSKEKAESLLDVMRSKRYLIHSLPFNLMMTLYMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEHVFEQMSTDPTITPNWSTFSTMAAMYIKMELFEKAQECLKKVEGRILGRDRVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAIISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGNSDKVSSFFEHMTEGGGCPNSTTWELLFEGHIAEKRVSEALSCLEKAFMTSGSKSWKPKPIKLAAFLKLCQDEDDMESAEVLIELLRKSGYHNDEAYASLISKDELSSRIERIDDGDSENMDDDDSQVLFNQVDSSF* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0148 541 SUPERFAMILY TPR-like 239 389 IPR011990 GO:0005515
Mal5g0148 541 Gene3D Tetratricopeptide repeat domain 105 353 IPR011990 GO:0005515
Mal5g0148 541 Gene3D Tetratricopeptide repeat domain 354 531 IPR011990 GO:0005515
Mal5g0148 541 PANTHER OSJNBB0038F03.9 PROTEIN 49 507 - -
Mal5g0148 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Mal5g0148 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 278 IPR002885 -
Mal5g0148 541 PANTHER OS12G0527900 PROTEIN 49 507 - -
Mal5g0148 541 TIGRFAM PPR: pentatricopeptide repeat domain 394 424 IPR002885 -
Mal5g0148 541 TIGRFAM PPR: pentatricopeptide repeat domain 217 248 IPR002885 -
Mal5g0148 541 TIGRFAM PPR: pentatricopeptide repeat domain 250 277 IPR002885 -
Mal5g0148 541 TIGRFAM PPR: pentatricopeptide repeat domain 181 209 IPR002885 -
Mal5g0148 541 Pfam PPR repeat 394 420 IPR002885 -
Mal5g0148 541 Pfam PPR repeat 358 382 IPR002885 -
Mal5g0148 541 Pfam PPR repeat 181 208 IPR002885 -
Mal5g0148 541 Pfam Pentatricopeptide repeat domain 236 295 IPR002885 -
Mal5g0148 541 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0148 Mal-Chr5 2753782 2757511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0148 9 509 EF-hand Containing Proteins AT1G02150 60.479 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0148 - - gmx:100780408 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0148 5 2753782 2757511 Mal5g0148 5 2753782 2757511 ECH