Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g5143 ATGGCCGAGCAAACTTTCATCATGATCAAGCCCGATGGCGTTCAAAGAGGCCTCGTTGGTGAGATTATTAGCAGGTTTGAAAAGAAGGGTTTCTACTTGAAAGGTTTAAAATTTGTGAATGTGGAGCGTGCTTTTGCTGAGAAGCACTATGCAGATTTGTCTGCAAAGCCTTTCTTTAGCGGATTGGTGGATTACATCATCTCTGGCCCTGTTGTTGCCATGATCTGGGAGGGTAAGAATGTTGTGACAACCGGAAGAAAGATAATTGGTGCCACAAACCCTGCTCAATCGGAGCCTGGAACTATCCGTGGTGACTTTGCCATTGACATTGGCAGGAATGTTATTCATGGAAGTGATGCTGTTGAAAGTGCTAACAAGGAAATTGCTCTGTGGTTCCCTGAGGGTGCTGCTAACTGGGAAAGCAGCCTTCACTCTTGGATCTATGAGTAA 450 0.4533 MAEQTFIMIKPDGVQRGLVGEIISRFEKKGFYLKGLKFVNVERAFAEKHYADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g5143 149 Gene3D - 1 149 IPR036850 -
Psa4g5143 149 SMART ndk_5 2 139 IPR034907 -
Psa4g5143 149 Pfam Nucleoside diphosphate kinase 3 134 IPR034907 -
Psa4g5143 149 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 3 149 - -
Psa4g5143 149 PRINTS Nucleoside diphosphate kinase signature 5 27 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Psa4g5143 149 PRINTS Nucleoside diphosphate kinase signature 49 68 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Psa4g5143 149 PRINTS Nucleoside diphosphate kinase signature 69 86 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Psa4g5143 149 PRINTS Nucleoside diphosphate kinase signature 90 106 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Psa4g5143 149 PRINTS Nucleoside diphosphate kinase signature 113 132 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Psa4g5143 149 ProSitePatterns Nucleoside diphosphate kinases active site. 113 121 IPR023005 -
Psa4g5143 149 SUPERFAMILY Nucleoside diphosphate kinase, NDK 2 149 IPR036850 -
Psa4g5143 149 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 3 149 - -
Psa4g5143 149 CDD NDPk_I 3 132 - -
Psa4g5143 149 Hamap Nucleoside diphosphate kinase [ndk]. 2 143 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g5143 Psa-Chr4 443225311 443227213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g5143 K00940 - gmx:547870 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g5143 4 443225311 443227213 Psa4g5143 4 443225311 443227213 ECH