Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu10g0477 ATGTTCTGTAACTCCCAAATGGCGGCGTTTGCTAAATCCTCCCAACTTCATGCTCAAAGGGATAATCCCCTTCTTCCTTCTCCTACTTCCACCAATTGCAACCTCAAAGCTTTCACTTTTACGCACAACCTGCACACCCTTCATCCCCCTCTTAGAAAAGTTAAACATGTTTCTGTTTCAAGTTCTGCCGCTGCCACTACCTCCCTCAGCAACCACCACAGCCACGACGCAAACTCTGATATTTCCCAACTGTGCCTTCTTGGGAACTTGGACCGTTGCATGAGCTACTTAGACTCCATGCACCAGCTTCGAATTCTCGTTGAAGATGATACTTACGTTGCCTTGGTACGACTATGTGAGTGGAAGGGAGCAAGGAAGGAAGGGTCTCGTGTTTATTCCTATGTTTCCATGTCCAGGACCCTTTTGAGCCTTCAACTGGGGAATGCGCTTTTGAGTATGTTTGTGAGGTTTGGGAACTTGGTGGATGCTTGGTATGTTTTTGGGAGAATGGAGAAAAGGAATTTGTTCTCTTGGAATGTTTTGATTGGTGGGTATGCTAAAGCTGGCTTCTTTGATGAGGCTCTTGACCTCTATCATAGAATGTTGTGGGTTGGTGAGAGGCCTGATGTTTACACTTTCCCTTGCGTTTTGAGGACTTGTGGTGGCATGCCTAACTTGATGAGGGGTAGAGAGATTCATGTGCATGTTGTAAGAAACGGGTTTGAGTCAGATGTGGATGTGCTTAATGCATTGATAACTATGTATGTGAAATGTGGGGATGTCAGTACTGCTAGGTTGGTGTTCGAAAAAATGTCTAATAGAGATAGGATTTCGTGGAATGCCATGATTTCAGGGTATTTTGAAAATGGGGAGTGTTTGCAGGGATTGAGACTGTTCGTGATGATGATTGAATATCCTGTTGATCCAGATTTGATGACCATGATCAGTGTGATTACTGCATGTGAGCTTCTGGGTGATGAGAGATTGGGGAGGGAGATTCATGGTTATGTTCTTAGAATGGGGTTCGGGAGAGACCCTTCAGTTCAAAATTCCTTAATTCAGATGTACTCATCTGTTGGACATATTCAGGAAGCTGAAACAGTTTTCTCTCGAACAGAATATAGAGATGTGGTGTCATGGACTGCAATGATATCAGGTTACGAGAATTGTTTGATGCCTCAGAAAGCACTTGAGACATATAAAATTATGGAAGCAGAAGGTGTCATGCCAAATGAAATCACCATTGCCACTGCACTCTCTGCTTGTTCTGGTATATGCAAATTAGACATGGGGACAGACCTTCATGAGGCGGCCAAACAGACAGGTCTCATCTCTCATCCGATAGTTGGAATGAAAGTCACCAAACTCAAGCCAAAACCAAATGTGTCTTCCATCAAACAGCACATCAACCTCAAAGAAACACAACAACTCCAAGGTCACTTCATCAAAACCAGTTTCAAATGGAGTTTTAGACTTCCTTTTGCAGCACTTGAATATTATTCTAGCAATGCAGCAATTCAAAGCTTTCTAATTACATCTTACATAAAAAACAACTGCCCTGCAGATGCGGCAAAAATGTATGCCTACATGCGTAGAACAGACACTGAAGTTGACAATTTTATCATACCCTCGGTTCTCAAAGCCTGCTCTCTTATCCCTTCAATCTTGCTAGGACAAGAGTTGCATGGTTTTGTGGTGAAAAATGGATTTCATGGGGATGTTTTTGTGTGTAATGCTTTGATCATGATGTACAGTGAGGCTGGAAGCTTGGCATCGGCACGACTGTTATTTGATAAGATTGAAAACAAAGATATTGTTTCTTGGAGTACTATGATTAGGAGCTATGATAGGAGTGGCTTATTTAATGAAGCATTGAACCTTTTTAGAGATATGCTTGTTATGGGAGTGAGGCCTAGTGAAATTGCAATGATAAGCATCACACATGTCTTAGCAAAACTTGCTGATTTGAAAACGGGGAAAGCCATGCATGGTTATGTAATAAGGAATGTGAAGTATGGAAAATCAGGAGTTTCTCTAAGTACTAGTTTGATTGATATGTATGTTAAATGTGGAAATTTAGCTTATGCAATAAGGCTTTTTGATGGCTTGTCTGAGGCTAGTATCATTTCATGGACTACTATGATTGCAGGCTACATTCATTGCAATAATTTGAATGAAGGTGTAAGACTCTTTGTCAAAATGCTTGATGAGGGTATGTTTCCAAATGATATTTCAATCCTTAGTTTGGTAAAAGAATGTGGCACAGTAGGAGCTCTAGAACTAGGAAAGTGGTTGCATGCTTTCACATTAAGAAGTGGATTTACAATGTCTTTGGTTCTAGCCACTGCTTTTATTGACATGTATGGCAAATGTGGTGATGCTAGAATTGCAAGATCTGTATTTAGCAGCTTCAAGGGCAAAGATTTTATGATGTGGAGTGCCATGATTTCAGCTTATGCACAAAACAATTGTATAAATGAAGCCTTTGATATCTTTATTCAGATGACAAGTTGTGGAATAAGGCCAAATGAGATAACCATGGTTAGTCTCCTTAGGATATGTGCAAAAGCTGGATCACTTGAAATGGGGAAGTGGATCCATTCTTACATAGACAAGCAAGGAATTAAAGAAGACATGATTCTTAAAACATCTTTGGTGAACATGTATGCCAAATGTGGAGACATAGATGCAGCTCATAGATTATTTGATGCAGTGATGGACCGAGACATTTTAATGTGGAATGCCATGATATCTGGTTTTGCAATGCACGGTCATGGTGAGGCCGCATTGAAACTCTTTGAAAAAATGGAAGCACTAATGGTTGTCCCTAATGACATTACATTCATTGGAGCTCTTTATGCTTGTAGCCACTCAGGATTGTTGCATGAAGGGAGGAGGTTGTTTCACAAAATGGTTCATGAATTTGGGGTTGTCCCTAAAGTTGAGCACTATGGTTGTATGGTGGATCTTCTTGGTAGAGCAGGAATGCTTGATGAAGCAAAGAAACTAATTGAAAACATGCCTATGAAGCCAAACATGGTTGTGTTTGGATCTCTTCTTTCTGCATGCAAGCTTCACAAAAATCTCAAACTAGGAGAATGGATAGCAGAACAATTTTTGTCATTGGAACACCATAAAAGTGGGTATAATGTTCTAATGTCAAACATATATGCTTCAGAAAGTAGATGGGGTGATGTTGCACATATAAGGAGAGGTATGAAGGATGAGGGAATTGTTAAAGTAGCAGGTGTAAGTTCCATTGAAGTGAATGGATCACTTCATGAATTCATAATGGGAGATAGGGATCACCCAGATGCTGAAAAAATTTATGAAATGATTGGTGAGATGAGAGAAAAACTGGAAGATGTTGGATACACCCCAGATGTATCTTGTGTTCTGATGAACATGGACAATGAGGAGAAAGAAACTGCACTTAACTATCACAGTGAAAAACTAGCAATGGCATATGGACTGATTAGCACTGCTCCTGGTGTTCCAATTAGAATTGTGAAGAATCTTAGAATTTGTGATGATTGCCACAATGCAACCAAGTTGCTTTCCAAGATTTATGGGAGGGAGATCATAGTGAGGGACCGAAATCGTTTTCATCACTTTCAAGAAGGATATTGTTCTTGTTGTGATTATTGGTAA 3651 0.4024 MFCNSQMAAFAKSSQLHAQRDNPLLPSPTSTNCNLKAFTFTHNLHTLHPPLRKVKHVSVSSSAAATTSLSNHHSHDANSDISQLCLLGNLDRCMSYLDSMHQLRILVEDDTYVALVRLCEWKGARKEGSRVYSYVSMSRTLLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLIGGYAKAGFFDEALDLYHRMLWVGERPDVYTFPCVLRTCGGMPNLMRGREIHVHVVRNGFESDVDVLNALITMYVKCGDVSTARLVFEKMSNRDRISWNAMISGYFENGECLQGLRLFVMMIEYPVDPDLMTMISVITACELLGDERLGREIHGYVLRMGFGRDPSVQNSLIQMYSSVGHIQEAETVFSRTEYRDVVSWTAMISGYENCLMPQKALETYKIMEAEGVMPNEITIATALSACSGICKLDMGTDLHEAAKQTGLISHPIVGMKVTKLKPKPNVSSIKQHINLKETQQLQGHFIKTSFKWSFRLPFAALEYYSSNAAIQSFLITSYIKNNCPADAAKMYAYMRRTDTEVDNFIIPSVLKACSLIPSILLGQELHGFVVKNGFHGDVFVCNALIMMYSEAGSLASARLLFDKIENKDIVSWSTMIRSYDRSGLFNEALNLFRDMLVMGVRPSEIAMISITHVLAKLADLKTGKAMHGYVIRNVKYGKSGVSLSTSLIDMYVKCGNLAYAIRLFDGLSEASIISWTTMIAGYIHCNNLNEGVRLFVKMLDEGMFPNDISILSLVKECGTVGALELGKWLHAFTLRSGFTMSLVLATAFIDMYGKCGDARIARSVFSSFKGKDFMMWSAMISAYAQNNCINEAFDIFIQMTSCGIRPNEITMVSLLRICAKAGSLEMGKWIHSYIDKQGIKEDMILKTSLVNMYAKCGDIDAAHRLFDAVMDRDILMWNAMISGFAMHGHGEAALKLFEKMEALMVVPNDITFIGALYACSHSGLLHEGRRLFHKMVHEFGVVPKVEHYGCMVDLLGRAGMLDEAKKLIENMPMKPNMVVFGSLLSACKLHKNLKLGEWIAEQFLSLEHHKSGYNVLMSNIYASESRWGDVAHIRRGMKDEGIVKVAGVSSIEVNGSLHEFIMGDRDHPDAEKIYEMIGEMREKLEDVGYTPDVSCVLMNMDNEEKETALNYHSEKLAMAYGLISTAPGVPIRIVKNLRICDDCHNATKLLSKIYGREIIVRDRNRFHHFQEGYCSCCDYW* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 74 226 IPR011990 GO:0005515
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 883 1105 IPR011990 GO:0005515
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 277 304 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 606 636 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 350 371 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 883 907 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 709 738 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 248 273 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 576 604 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 681 703 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat 983 1008 IPR002885 -
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 327 430 IPR011990 GO:0005515
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 558 665 IPR011990 GO:0005515
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 227 326 IPR011990 GO:0005515
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 666 758 IPR011990 GO:0005515
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 808 842 IPR002885 -
Pvu10g0477 1216 PANTHER BNAC05G11880D PROTEIN 24 451 - -
Pvu10g0477 1216 PANTHER BNAC05G11880D PROTEIN 606 904 - -
Pvu10g0477 1216 PANTHER BNAC05G11880D PROTEIN 510 613 - -
Pvu10g0477 1216 PANTHER BNAC05G11880D PROTEIN 905 1188 - -
Pvu10g0477 1216 Pfam PPR repeat family 909 950 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat family 375 422 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat family 174 220 IPR002885 -
Pvu10g0477 1216 Pfam PPR repeat family 810 856 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 811 844 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 176 202 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 277 310 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 606 640 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 248 274 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 912 944 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 148 174 IPR002885 -
Pvu10g0477 1216 TIGRFAM PPR: pentatricopeptide repeat domain 709 742 IPR002885 -
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Pvu10g0477 1216 Pfam DYW family of nucleic acid deaminases 1124 1216 IPR032867 GO:0008270
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 707 741 IPR002885 -
Pvu10g0477 1216 Gene3D Tetratricopeptide repeat domain 759 873 IPR011990 GO:0005515
Pvu10g0477 1216 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 909 943 IPR002885 -
Pvu10g0477 1216 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 606 904 - -
Pvu10g0477 1216 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 510 613 - -
Pvu10g0477 1216 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 24 451 - -
Pvu10g0477 1216 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 905 1188 - -
Pvu10g0477 1216 Pfam E motif 1026 1088 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu10g0477 Pvu-Chr10 6949244 6953123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu10g0477 271 971 Glycoside Hydrolase AT3G49170 25.824 4.89e-64 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu10g0477 - - pvu:PHAVU_010G046000g 2441.77