Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip09g01303 ATGAATTGCAAGCGTCTGATTTCCGGAGGGTCATGGCTACTCCGCCGGCTGTGCACCGCTGCCACTGAGGCTCTGCCACCGAAGAAGAAGGAATCTCTTTATCGGAAGATATCATCGCTGAACATGACCGGAGGGAGCGTGTCTCAGATACTGAACCAGTACGTAATGGAAGGCAACGTCATCAGCAAACGTGAGCTCGAAAGATATGTCGTGGAGCTCCGAAAGTATCGTAAGTTCCAGCACGCACTTGAGATAATGGAATGGTTGGAGAGGAGGAAAATTAACTTTGCTTTGAATGATTATGCGGTGTACTTAGATCTTGTGTCGAAGACCAAAGGGGTGGCTGCTGCTGAGAATTACTTTAGTGGTCTTCCACCGCGTGCCAAGAACAAGTTTACATATGGTGCTCTTTTGAACTGTTACTGCAAGGAACAAATGACGGACAAGGCACTGGCTCATTTTAGAAAGATGGATGAGTTGCATTATGTCACTAACCTGGCCTTCAACAACTTGATGACTCTGTATATAAGGCTGGGTCAGCCCGAGAAGGTGCCTCAGCTGGTGGAAGATATGAAGCAGAGGAAGATCCCCTTGAATGATTTCACATATCATATATGGATGAATAGCCTCGGGAATCTGAATGATCTCGACGGTGTTGAAAGAGTCTATGACGAGATGAAAAGAGAAAACAATGACAAAATTGATTGGCATACTTATTGCAACCTTACTTCTATCTATGTAAAGGCCAAACAGTTTGAGAAAGCCGAGTCTATGCTTAAGATGCTAGAAGAAAAGGCGAAACCCTCAATGCGTGACGCTTATCATTTCATGCTTTACCTCTACGCAGGCACTTCTAATCTACAAGAGGTTCATAGAGTGTGGAACTCCCTCAAGACGGTCTCCCCAGTGACCAGCACAAGTTATTTGACTATGATGCGTGCCCTTCGGAAGCTTAATGATACGGAGGGTATAATAAAATGCTTTAAGGATTGGGAATCTAACACTGTTGGTTATGATATAAGGTTGGTTAGTATTGCTGTCAGTGCTTACTTGAGTCAGAACCTGTATGAAGAAGCTGAATCACTCTTTAAAGAGGCTACTTGTAAGAGCAAAGGACCTTTCTTTAAGATTCACGAATCGTTCATGATCTACTTCTTGGAGAAGCGTCAGTTGGATAATGCCATGAGCCACCTTGAAGCACTGGTTTCAGAAAGCAAATGGCACCCTACACCAGAATTAGTAGGTGCTTTTCTGAAGTATTATGAAGAGACAGATCTTGATGGTGTTGAGGAGTTATGCAGGATTTTCAAGAGTTACAATTATGATGATTCCTGGCTTACGACGTACATTACAGCATCGAAAGTGTCTCCTGAAGCTCATCAAATGTTGAAAGAAGATTCTCAAGCAAACCATGAACTTCAGAACCTGCAAGCTGACATGCACTCTGGATAG 1452 0.436 MNCKRLISGGSWLLRRLCTAATEALPPKKKESLYRKISSLNMTGGSVSQILNQYVMEGNVISKRELERYVVELRKYRKFQHALEIMEWLERRKINFALNDYAVYLDLVSKTKGVAAAENYFSGLPPRAKNKFTYGALLNCYCKEQMTDKALAHFRKMDELHYVTNLAFNNLMTLYIRLGQPEKVPQLVEDMKQRKIPLNDFTYHIWMNSLGNLNDLDGVERVYDEMKRENNDKIDWHTYCNLTSIYVKAKQFEKAESMLKMLEEKAKPSMRDAYHFMLYLYAGTSNLQEVHRVWNSLKTVSPVTSTSYLTMMRALRKLNDTEGIIKCFKDWESNTVGYDIRLVSIAVSAYLSQNLYEEAESLFKEATCKSKGPFFKIHESFMIYFLEKRQLDNAMSHLEALVSESKWHPTPELVGAFLKYYEETDLDGVEELCRIFKSYNYDDSWLTTYITASKVSPEAHQMLKEDSQANHELQNLQADMHSG 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip09g01303 483 Gene3D Tetratricopeptide repeat domain 270 446 IPR011990 GO:0005515
Aip09g01303 483 Gene3D Tetratricopeptide repeat domain 63 163 IPR011990 GO:0005515
Aip09g01303 483 Gene3D Tetratricopeptide repeat domain 164 269 IPR011990 GO:0005515
Aip09g01303 483 PANTHER OS12G0527900 PROTEIN 3 477 - -
Aip09g01303 483 Pfam PPR repeat family 167 210 IPR002885 -
Aip09g01303 483 Pfam PPR repeat 132 159 IPR002885 -
Aip09g01303 483 Pfam PPR repeat 238 265 IPR002885 -
Aip09g01303 483 Pfam PPR repeat 347 365 IPR002885 -
Aip09g01303 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Aip09g01303 483 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Aip09g01303 483 TIGRFAM PPR: pentatricopeptide repeat domain 167 199 IPR002885 -
Aip09g01303 483 TIGRFAM PPR: pentatricopeptide repeat domain 201 229 IPR002885 -
Aip09g01303 483 TIGRFAM PPR: pentatricopeptide repeat domain 132 160 IPR002885 -
Aip09g01303 483 SUPERFAMILY TPR-like 130 329 IPR011990 GO:0005515
Aip09g01303 483 PANTHER OS01G0301500 PROTEIN 3 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip09g01303 Aip-Chr9 21764348 21767148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip09g01303 19 434 EF-hand Containing Proteins AT1G02150 32.553 2.23e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip09g01303 - - gmx:100781679 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g01303 09 21764348 21767148 Aip09g01303 09 21764348 21767148 ECH