Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0802 ATGGTCGATCTCGCGCGCCAAGTGTTTGGTGAAATTCCCAAGCGAGACGTTAATGCATGGAGTACTATGATTACCCGTTTCGCGCGCAATGGAATGTCGAGGGAAGTGTTGGAGTATACGAGGTTGATGTTAGAGGAAGGAATCAATCCAAAATTGGTTGTAATGACAGTTATTCTTGATGCTATAGGGGAAGTTCGTGCTCGAAATTTAGGTAGGGAGGCTCATGGATTTGTGGTGAAGAGGAATTTGTATTATGAAGAATTGTCGATTCAATCGGCGTTGATCGATATGTATTGGAAGTGCGGCGATGTTGGCTCGGGGAGCCGAGTTTTGAATGGTGTGATGAAGAGGAAGAgtgattgttggattggattGATGTCGGGGAGACTTGAGGTGGCAATGAGGTCTATTGTTCGGTTGAAGAGGTTCTGGCCTGGTGTTGTTGCGGTTGCTTCCATGCTTCCAATTTGTGCACAGTTGAGGGCTCTGAAACAAGGGAAGGAGATTCATGCTTATGCGTTGAGACATCGGTTTCTGCCTCACGTGTCCATAGTTTCGTCGTTGATGGTGTTGTACTCTAAGTGTGGTGTGATTGAGTATTCCATGAGACTTTTTGATGGATTGGAGAGGAGGAATGTGGTTTTATGGACCGCCATGATTGATTCGTGCGTTGAAAATGGGCGTGTGTGTGAAGCACTCGGTGTCATGAGGTCAATGGTATTGACGGAGCATAGGCCAGACACGGTTACCATGGCTAGGATGTTGCGTGTTTGTGGCGAGCTGAAAGTTTTAAAGCTTGGGAAGGAGGTTCACGGGCAGGTATTGAAAAGGGGTTTTGCATTGGTCCATTATGTTGCCGCGGAACTGATTGATATGTATGGGATTTGTGGAGACGTTGATAAGGTGAAGTTGGTGTTTAGTGCGGTTCCTGTTAAAGGTTCGATGACATGGAGTGCCCTTATAAGGGCCTATGGGTATAAAGAACGGTATCAAGATGCAGTTGACCTTTTCGATGACATGATATCAAATGGTTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTCTATCTATTTGTGATAGAGCTGGATTTGTTGAAGATGCATTTAGGATCTTTGATTTGATGTTGAGATATAAAATTGAAGCATCCAAGGAACACTGCACTATAATGATTCGACTTCTTACCCGCTATGGTAAACTAGATGAGGCTCAAAGATTTGTGGAAATGAGTTCTTCCTTATAG 1242 0.4388 MVDLARQVFGEIPKRDVNAWSTMITRFARNGMSREVLEYTRLMLEEGINPKLVVMTVILDAIGEVRARNLGREAHGFVVKRNLYYEELSIQSALIDMYWKCGDVGSGSRVLNGVMKRKSDCWIGLMSGRLEVAMRSIVRLKRFWPGVVAVASMLPICAQLRALKQGKEIHAYALRHRFLPHVSIVSSLMVLYSKCGVIEYSMRLFDGLERRNVVLWTAMIDSCVENGRVCEALGVMRSMVLTEHRPDTVTMARMLRVCGELKVLKLGKEVHGQVLKRGFALVHYVAAELIDMYGICGDVDKVKLVFSAVPVKGSMTWSALIRAYGYKERYQDAVDLFDDMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMLRYKIEASKEHCTIMIRLLTRYGKLDEAQRFVEMSSSL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0802 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Ssu2g0802 413 PANTHER - 2 413 - -
Ssu2g0802 413 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 2 413 - -
Ssu2g0802 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Ssu2g0802 413 Gene3D Tetratricopeptide repeat domain 284 412 IPR011990 GO:0005515
Ssu2g0802 413 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Ssu2g0802 413 Gene3D Tetratricopeptide repeat domain 127 282 IPR011990 GO:0005515
Ssu2g0802 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 16 50 IPR002885 -
Ssu2g0802 413 TIGRFAM PPR: pentatricopeptide repeat domain 316 348 IPR002885 -
Ssu2g0802 413 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Ssu2g0802 413 TIGRFAM PPR: pentatricopeptide repeat domain 19 50 IPR002885 -
Ssu2g0802 413 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Ssu2g0802 413 Pfam PPR repeat 19 48 IPR002885 -
Ssu2g0802 413 Pfam PPR repeat 214 240 IPR002885 -
Ssu2g0802 413 Pfam PPR repeat family 314 357 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0802 Ssu-Chr2 41754673 41755914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0802 5 408 Glycoside Hydrolase AT3G49170 24.460 2.71e-45 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0802 - - gmx:100780947 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g0802 2 41754673 41755914 Ssu3g0566 3 14296225 14297805 PCT