Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach6g00960 CAAGATGCTCCTTCAGCCATCTTTGCACAACCAAAGTATCTCTCTCTCCTCATCCCTACACTATTCTCGACCTCTTCCCTGCAGAGTTTCTAACTTTACCCTTCCACAAGCCGTGGATTTCCAGAGACCCTCAGTCACCTGCTCAATCTCGAAGATTCACAGTTATGGAACCGTGGACTACGAGCGAAGACCCAGTGTTAAGTGGAATGATATATACAGGAGAATATCTTTGATGAAAAATCCCGAGTTGGGTTCAGCGAGTGTGCTGAACCAGTGGGAGAATGAGGGGAAGAACCTCACCAAATGGGAGCTTTGTAGAGTGGTCAAAGAGCTGAGGAAATACAAGAAGCACGAGAGAGCTCTCGAGGTATATGACTGGATGAACAACAGGGGAGAGAGGTTTCAATTGTCTGAAAGTGATGCTGCAATTCAATTAGACCTAGTTGCCAAAGTTCATGGAGTTTCTAGAGCTGAAGAATATTTCATAAGGCTCACTGATAAAATAAAAAATACTAGACCATATGGGGCTCTTTTGAATGCATATGTGCGGGCTAAACTTAAAGACAAGGCAGAATCTTTACTTGACGCGATGAGGAATAAGGGGTATGCGACACATTCACTTCCATTTAATGTAATGATGACTCTGTACATGAACTTAAAGGAATATGACAAAGTTGGCTTGATGGTTTCTGAAATGATAGAAAAGAACATACGGCTAGATATATATTCATATAACATCTGGTTATCTTCTTGTGGATCCCAAGGATCAACAGAAAAGATGGAACAAGCATTTGAACGAATGACAAAGGATAAGACAATTATTCCCAACTGGACTACTTTCAGCACAATGGCTACAATGTACATTAAGTTGGATCAGTTAGACAAGGCGAAAGAGTGCTTGAGAAAGGTTGAGAGTAGAATCAGAGGTAGAGATAGAATTCCTTATCATTATCTCCTCAGTTTATATGGAAATGCTGGTATAAAAGAGGAGGTTTATCGTGTGTGGAATACCTATAAATCAATTTTCCCCAGCATTCCAAACTTGGGATACCATGCTATTATTTCCTCTCTGGTTAGAATTGGTGATATTGAAGGCGCAGAAAAACTTTACGAGGAATGGCTTTCTGTAAAATCAACTAATGATCCCAGAATAGCAAATCTTCTCATAGGTTGGTATGTCAAGAACGGAGATGTATACAAAGCTTTGGATATCTTTGAGCATATGATTGAAGTTGGTGGAAGACCAACTTCAAGTTCATGGGAGCTTCTTGCCGACGGCTATATTGGTGAGAATAGGGTTTCTGAAGCCTTGGCTTGCTTTAAAGGAGCTTTTAAGGTTGATGGTTCAAAGTATTGGAGGCCAAAGCCAGTAAGTGTGTCTTCTTTCTTCAGGCTCTGTCGAGACAAAGATGACTTAGCAAGCAGTGAAGCTTTGGCTGGGTTGTTCAGGCAGTCAACTTTGCTTAAGGATGAAGCTTATGCATCCCTCATTGGCTTATCTGATGGTGCCAATGGTAGCAATGACTTGTTGAGCAAGATTGATACCACCGATAGAACAGATGATGACTATGACATTGAGAACACTGATGATGGTTCTCAAATCCTTGTCAACCAACTGGGGGATAGTCAGTAA 1633 0.4115 MLLQPSLHNQSISLSSSLHYSRPLPCRVSNFTLPQAVDFQRPSVTCSISKIHSYGTVDYERRPSVKWNDIYRRISLMKNPELGSASVLNQWENEGKNLTKWELCRVVKELRKYKKHERALEVYDWMNNRGERFQLSESDAAIQLDLVAKVHGVSRAEEYFIRLTDKIKNTRPYGALLNAYVRAKLKDKAESLLDAMRNKGYATHSLPFNVMMTLYMNLKEYDKVGLMVSEMIEKNIRLDIYSYNIWLSSCGSQGSTEKMEQAFERMTKDKTIIPNWTTFSTMATMYIKLDQLDKAKECLRKVESRIRGRDRIPYHYLLSLYGNAGIKEEVYRVWNTYKSIFPSIPNLGYHAIISSLVRIGDIEGAEKLYEEWLSVKSTNDPRIANLLIGWYVKNGDVYKALDIFEHMIEVGGRPTSSSWELLADGYIGENRVSEALACFKGAFKVDGSKYWRPKPVSVSSFFRLCRDKDDLASSEALAGLFRQSTLLKDEAYASLIGLSDGANGSNDLLSKIDTTDRTDDDYDIENTDDGSQILVNQLGDSQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach6g00960 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Bach6g00960 542 FunFam Pentatricopeptide repeat-containing protein 81 225 - -
Bach6g00960 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Bach6g00960 542 SUPERFAMILY TPR-like 258 447 IPR011990 GO:0005515
Bach6g00960 542 FunFam Pentatricopeptide repeat-containing protein 226 346 - -
Bach6g00960 542 PANTHER OS12G0527900 PROTEIN 60 495 - -
Bach6g00960 542 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Bach6g00960 542 Gene3D Tetratricopeptide repeat domain 232 345 IPR011990 GO:0005515
Bach6g00960 542 Gene3D Tetratricopeptide repeat domain 346 460 IPR011990 GO:0005515
Bach6g00960 542 NCBIfam pentatricopeptide repeat 173 201 IPR002885 -
Bach6g00960 542 NCBIfam pentatricopeptide repeat 385 415 IPR002885 -
Bach6g00960 542 NCBIfam pentatricopeptide repeat 241 275 IPR002885 -
Bach6g00960 542 Gene3D Tetratricopeptide repeat domain 73 231 IPR011990 GO:0005515
Bach6g00960 542 Pfam Pentatricopeptide repeat domain 228 286 IPR002885 -
Bach6g00960 542 Pfam PPR repeat 385 411 IPR002885 -
Bach6g00960 542 Pfam PPR repeat 173 200 IPR002885 -
Bach6g00960 542 Pfam PPR repeat 349 373 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach6g00960 Bach-Chr6 7805408 7808004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach6g00960 1 516 EF-hand Containing Proteins AT1G02150 61.434 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach6g00960 - - qsa:O6P43_017262 784.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach6g00960 6 7805408 7808004 Bach6g00960 6 7805408 7808004 ECH