Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy19g0687 ATGGAAACCACAGTTCCAATTCCAACCTCAGCTGCAACTCCAACTTCATCTCTCTCTCTTTCTCTTTTCTCTTCAAACACCAACCGCACCTCTCTCCAACTCCCCTTCAACTCTAAACCTCCTCCTTCCATCATCACACAGCAACAACAACCACCACCCAATAACCCTAAACTCAAATTTGCATTTCAACTACAAAACGACGCCGTTTCGGGCAAGTCGCGAACGACGCTATTGGGAGGAGCAGAATTGGATGTGTCTAGCTTTGTGAATGTTATTGAAAGCTTGGGTGATGCAAATGCGGTTCAAGAAGGGTTTAAGGTTCATGCCATTTTGGTTAAGAACGGTTATTTTGATGCTAGTTTATATATTAAGGTCTGTTTGGTTAGAATGTATTTTAGGTGTGGGAAAGTTGAGCTTGCGCGGAGGGTGTTTGATGAAAGTTCTGAGAGAGATGTTTCTTTGTGGGGTGCCATGGTTGCTGGTTTTGCACACCATGGGATGCGGATTGAAGCATTGCAGTATGTGAGGTTGATGGTAGATGAAGGAATAATGCCGAATTCGGCTTTGATGATGGGTGTTCTTCCCTTAGTTGGGGAGCTTGGCGCATTGCGGATAGGTCAAGAGGCTCATGCTTACTTAGTGAAGAAGAAATTTTACTATGAGCAAGTGCGAATTCGAACTGCATTGGTTGATATGTACAGTAAATGTGGGGATGTTGGTTCGGGGAGGCGAGTTTTGTCTAGCTTGGTAGAGAGAGGTATAAGTTGTTGGAGTGCTCTGATTGCGGGTTCTGTCTCGAGTGGGGGGTTTCAAAAGGCGGTGAAGTCCATGGTTAGAATGCAGCGAGAAGGGTTCCGGCCTAGTCATGTCAGTGTTGCTTCTATCCTTTCGGTTTGTGCACAGTCGAGGGCTCTGAAACGGGGGAAGGAGATTCATGCTTATGCTTTAAAACATTGGTTTCTGCCTCATGTCTCTATAGCTTCTTCGTTGATGGTGTTGTACTCTAAGTGTGGTTTGATTGAGTATTGTAGAAACCTATTTGATGGTATGGAACGAAGGAATGTGATCCTGTGGACAGCTATGTTTGATGCATATGTGGAAAATGGGTGTTTTCCTGAAGCATTTGGTGTCCTAAGGTCAATGCAATTGACAGAGTATAGGCCGGACACAGTTACCATGGCGAGGATGTTAAGTCTTTGCAGCAAACTAAAACTTGTAAAGCTTGTGCTTGATAAAGGTTCAATGACATGGACTGCTCTTATAAGGGCATATGTATATAAAGAATTTTATAAAGATGCAATTGACCTCTTTGATGACATGATTTCAAAGGGTTGTGCTCCGAACCGCTTTACTTTTGAAGCTGTTCTTTCTGTATGTGATAAAGCTGGTTTTGTTGAAGAGGCAATTAGGATCTTCAATTTACTGTCAAGGTATAAAGTTGAAGCATCCAAGGAACACTGCGTTTCAATGATTCAGCTTCTTACACGTTATGGTAAACTAGATGAGGCTCAAATATTTGTAGAAATGAGTTCTTTGTTATAG 1542 0.4267 METTVPIPTSAATPTSSLSLSLFSSNTNRTSLQLPFNSKPPPSIITQQQQPPPNNPKLKFAFQLQNDAVSGKSRTTLLGGAELDVSSFVNVIESLGDANAVQEGFKVHAILVKNGYFDASLYIKVCLVRMYFRCGKVELARRVFDESSERDVSLWGAMVAGFAHHGMRIEALQYVRLMVDEGIMPNSALMMGVLPLVGELGALRIGQEAHAYLVKKKFYYEQVRIRTALVDMYSKCGDVGSGRRVLSSLVERGISCWSALIAGSVSSGGFQKAVKSMVRMQREGFRPSHVSVASILSVCAQSRALKRGKEIHAYALKHWFLPHVSIASSLMVLYSKCGLIEYCRNLFDGMERRNVILWTAMFDAYVENGCFPEAFGVLRSMQLTEYRPDTVTMARMLSLCSKLKLVKLVLDKGSMTWTALIRAYVYKEFYKDAIDLFDDMISKGCAPNRFTFEAVLSVCDKAGFVEEAIRIFNLLSRYKVEASKEHCVSMIQLLTRYGKLDEAQIFVEMSSLL* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy19g0687 513 Gene3D Tetratricopeptide repeat domain 412 512 IPR011990 GO:0005515
Ahy19g0687 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Ahy19g0687 513 Gene3D Tetratricopeptide repeat domain 199 306 IPR011990 GO:0005515
Ahy19g0687 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 80 408 - -
Ahy19g0687 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 412 510 - -
Ahy19g0687 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 357 382 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 227 254 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 256 285 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 126 150 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 154 183 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat 328 355 IPR002885 -
Ahy19g0687 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Ahy19g0687 513 PANTHER - 412 510 - -
Ahy19g0687 513 PANTHER - 80 408 - -
Ahy19g0687 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Ahy19g0687 513 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Ahy19g0687 513 TIGRFAM PPR: pentatricopeptide repeat domain 416 448 IPR002885 -
Ahy19g0687 513 TIGRFAM PPR: pentatricopeptide repeat domain 155 186 IPR002885 -
Ahy19g0687 513 Pfam PPR repeat family 413 459 IPR002885 -
Ahy19g0687 513 Gene3D Tetratricopeptide repeat domain 307 411 IPR011990 GO:0005515
Ahy19g0687 513 Gene3D Tetratricopeptide repeat domain 76 197 IPR011990 GO:0005515
Ahy19g0687 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy19g0687 Ahy-Chr19 9476710 9478581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy19g0687 38 503 Glycoside Hydrolase AT3G49170 22.011 9.08e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy19g0687 - - ahf:112777871 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy19g0687 19 9476710 9478581 Ahy9g0563 9 7884713 7886602 hybridization
Ahy19g0687 19 9476710 9478581 Ahy14g2705 14 134641134 134643499 PCT
Ahy19g0687 19 9476710 9478581 Ahy4g2378 4 120686793 120689100 PCT