Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0091 ATGGAAAGTTCTCTTTCATCTCTTCTTCACTCTCACTCCTTCACCACTCTCCATTTCAAACCCCAATCACCATTCTTACTCCAACATCAACAACCTCTCTCCCTCTCCACATCATCATTTACCAAAATACCCTTCTCCATTCACATTCACCAAAAGGGCATTCCTGTAAATCCATCAACCCCTAGAAAAATCTACATCAACGCTCCATTGCTCTCATGGGATTCAACTTCAACAACTCATGCCCAAATGAGGGCTTTGGAGTTGGAACTAAATGAGAGTCGTTTTCGAAGTGTTGTTTCCGGATTTGCAGGTTCGAATTCGATTCTAGAAGGGTTTAAGGTTCATGGGGTTTTGATTAAGAATGGTTTTTTGCCATCTAGTGTGGTTATGAATGCTTGTTTGGTTGAATTGTATTTCAAGTTTGGGGAAATTGAGCTTGCACGCCGAGTGTTTGATGAAAGTTGCCACAGAGATGTTTTTCTTTGGGGTGCTATGATTGGTGGTTTTGTTAGAAATAGGTTGCCTATGGATGCTTTGGAATATGTTAGGTTGATGGTGGAAGATGGAATGAGGTTGAATTCGGTTTTGGTGATTATTATTCTTCCTGTGATTGGGAAGGTTCGCGCACGGAGGATAGGTAAGGAGGTTCATGCTTATATTTTGAAGACAAGATTGGACTTTGGACAAGCTGCGATTCAGTTGGCGTTGGTTGATATGTATTGCAAGTGTGGGGAGATTGGTTTGGGAAGACGGGTTTTGTATAGCTCGATGGAGAGAAAAGTTGGTTCTTGGAATGCTGTGATGTCAGGTTATGCATCTATTGGGAGACTTGAGCAGGCAATCAGGTCCACGATTTGGGTGAGGAAGGGGTTCCGGCCTGGTGTTGTCGCAATTGCTACTGCTCTTCCGATTTATGCACATTCGAGGGCTCTGAAACAGGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGTTTTCTGCCTCACGTGTCTATAGTTTCTTCGTTGATGGTGTTGTATTCCAAGTGTGGTGTGATTGAGTATTCTTTAAAACTATTTGACTGGGTGGAACAAAGGAATGTGATACTGTGGACAGCTATGATCGATTCATATGTAGAAAGTGGGAGAATGTATGAAGCACTTGGTATCATAAGGTCAATGCAATTGACAGAGCATAGACCAGACACGGTCACCATAGCAAGGATGTTAAGTGTTTGCGGTGAACTAAAACTTGAAAAGCTTGGGAAGGAGATTCATGGGCAAGTATTGAAAAGAGATTTCACCTCAGTTCATTATGTTTCTGCCGAACTTATCAATATGTATGGGACTTGTGGAGTTGTTGAGAAGGCGAAGTTGGTGTTTGATGCAGTTCCTGTTAAAGGTTCAATGATATGGACCGCTCTTATAAGAGCCTACGGGTACAAAAAATTGTATCGAGATGCAATTGACCTTTTAGATCAAATGGTCTCAAATGGTTGTTCTCCAAACACCTTCACTTTTCAAGCTGTTCTATCTATCTGTGATAGAGCAGGACTTGTTGAAGATGCTTTAAGGATCTTCAATTTAATTTCTAGATATAAAATTGAAGCATCTAAGGAACATTGCATTTTAATGATTCGACTTCTTACCCGTTATGGTAAACTAGATAAGGCTCTAGGATTTGTAGAAATGATTTCTTCCTTAGAGTAG 1689 0.4091 MESSLSSLLHSHSFTTLHFKPQSPFLLQHQQPLSLSTSSFTKIPFSIHIHQKGIPVNPSTPRKIYINAPLLSWDSTSTTHAQMRALELELNESRFRSVVSGFAGSNSILEGFKVHGVLIKNGFLPSSVVMNACLVELYFKFGEIELARRVFDESCHRDVFLWGAMIGGFVRNRLPMDALEYVRLMVEDGMRLNSVLVIIILPVIGKVRARRIGKEVHAYILKTRLDFGQAAIQLALVDMYCKCGEIGLGRRVLYSSMERKVGSWNAVMSGYASIGRLEQAIRSTIWVRKGFRPGVVAIATALPIYAHSRALKQGKEIHAYALRHCFLPHVSIVSSLMVLYSKCGVIEYSLKLFDWVEQRNVILWTAMIDSYVESGRMYEALGIIRSMQLTEHRPDTVTIARMLSVCGELKLEKLGKEIHGQVLKRDFTSVHYVSAELINMYGTCGVVEKAKLVFDAVPVKGSMIWTALIRAYGYKKLYRDAIDLLDQMVSNGCSPNTFTFQAVLSICDRAGLVEDALRIFNLISRYKIEASKEHCILMIRLLTRYGKLDKALGFVEMISSLE* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0091 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 461 495 IPR002885 -
Lan12g0091 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 530 IPR002885 -
Lan12g0091 562 Pfam PPR repeat family 462 505 IPR002885 -
Lan12g0091 562 Pfam PPR repeat 363 388 IPR002885 -
Lan12g0091 562 Pfam PPR repeat 263 281 IPR002885 -
Lan12g0091 562 Pfam PPR repeat 161 189 IPR002885 -
Lan12g0091 562 Gene3D Tetratricopeptide repeat domain 285 434 IPR011990 GO:0005515
Lan12g0091 562 Gene3D Tetratricopeptide repeat domain 72 233 IPR011990 GO:0005515
Lan12g0091 562 Gene3D Tetratricopeptide repeat domain 435 561 IPR011990 GO:0005515
Lan12g0091 562 TIGRFAM PPR: pentatricopeptide repeat domain 161 193 IPR002885 -
Lan12g0091 562 TIGRFAM PPR: pentatricopeptide repeat domain 363 396 IPR002885 -
Lan12g0091 562 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Lan12g0091 562 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 77 561 - -
Lan12g0091 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Lan12g0091 562 PANTHER - 77 561 - -
Lan12g0091 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0091 Lan-Chr12 1000187 1002958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0091 86 558 Glycoside Hydrolase AT3G49170 25.000 1.10e-45 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0091 - - lang:109361554 1102.04