Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g03357 ATGATGACTACGCCTCTTCAAATTCAACCTTCTTTTCAAAACCAAAACCTTTCCATTTCTCTTTCCTCTTCCCTCTTCTACTCTCACACTCTTCCCTTCAAACAAAACCTCAGTGTCCGCTACATTTACCAGAGAAGAGGAACACTCTCGTTGACTTGTTCCATTTCAAAAGTTGACAACTATGGCACAGTTGATTTCGAGCGAAGACCTGCTAGTAAATGGGGTGTTCTTTACAAGAGAATCTCGATGATGAAAAACCCTGAACTGGGTTCTGCTTCTGTGTTGAATCAGTGGGAGAATGAAGGTAAACCTCTTACAAAATGGGATCTTTGTAGAATTGCCAAGGAGTTGAGAAAGTATAGAAGACATGACAAAGCTCTTCAGATATATGATTGGATAAACAACCGACCAGAGAGGTTTAGAATGTCTGCAAGTGACGTTGCGATTCAGTTAGATTTAGTCTCAAGAGTTCACGGAGTTTCAAGAGCAGAAGGATTTTTTCTGAACCTGACGGATGATTTAAAAGAGAAGAGGACATATGGTGCCCTCTTGAATGCATATGTTCATTCTAGATCAAAAGAGAAAGCGGAATCTTTACTCGAGGTAATGAGAAGTAAAAAGTATTTGACAAATTCACTTCCGTTTAATTTAATGATGACTATGTACATGAAACTTCAAGAATATGATAAAGTTGATAAGTTGGTTTCAGAAATGAAAGAAAAGAACATACCACTCGATATATATACATATAATATCTGGTTATCTTCTTGTGGAGCACAAGGATCAATAGAAAAGATGGAACAAGTTTTTGAACAAATGTCGACGGATCCTACCGTTATCCCTAACTGGAGTACATTCAGTATAATGGCTGCACTGTACATTAAGATGGAACTGTTCGAAAAAGCACAAGCGTCCTTGAAAAAGCTCGAGAGTAGGATAATTGGTCGAGATAGAATACCTTTTCATTTTCTCCTTAGTTTGTATGGAGGCATTGGAAACAAGGACGAAGTTTATCGCGTGTGGAATAGCTATAAATCAAGATTTCCAAGTGTACCTAACTTAGGATACCATGCTGTTATTTCTTCTCTCGTTAGAATGGATGATATTGAGGGCGCAGAGAAGCTTTACGAAGAATGGGTTTTGGTTAGGCCGTCCGATGATTCTAGAGTAGGAAACCTTCTCATGCGATGGTATCTTACGAATGGAAAATCAGATAAAGTTTTGAGTTTCTTTGAGCATATGATTGAAGGTGGTGGAGGTCCAAATTCAGCTACATGGGAGCTTCTTTCTGAGGTTCATGTTGGAGAAAAGAGGATTTCAGACGCTTTGTTGTGCTTGGAAAAGGCTTTTACTACTAGTGGTTCGAAAAGTTGGAAACTGAAGCCGATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACACGGATAGCGCCGAGGTTCTAATTGAGTTGTTGAGGAAGTCAGGATACCATGAAGATGAAGCATATGCGTCGCTAATTAGCAAAGATGACTTGTCAAGCAAGATTGAAAGAATGAATGATATTGTTGACAGTGAAAGCATGGATGGTGATGATAATGATGAGTCTCAAGTGTTGTTCAACCAAGTAGATGGTAGCTTTTGA 1632 0.3897 MMTTPLQIQPSFQNQNLSISLSSSLFYSHTLPFKQNLSVRYIYQRRGTLSLTCSISKVDNYGTVDFERRPASKWGVLYKRISMMKNPELGSASVLNQWENEGKPLTKWDLCRIAKELRKYRRHDKALQIYDWINNRPERFRMSASDVAIQLDLVSRVHGVSRAEGFFLNLTDDLKEKRTYGALLNAYVHSRSKEKAESLLEVMRSKKYLTNSLPFNLMMTMYMKLQEYDKVDKLVSEMKEKNIPLDIYTYNIWLSSCGAQGSIEKMEQVFEQMSTDPTVIPNWSTFSIMAALYIKMELFEKAQASLKKLESRIIGRDRIPFHFLLSLYGGIGNKDEVYRVWNSYKSRFPSVPNLGYHAVISSLVRMDDIEGAEKLYEEWVLVRPSDDSRVGNLLMRWYLTNGKSDKVLSFFEHMIEGGGGPNSATWELLSEVHVGEKRISDALLCLEKAFTTSGSKSWKLKPIKLAAFLKLCQDEDDTDSAEVLIELLRKSGYHEDEAYASLISKDDLSSKIERMNDIVDSESMDGDDNDESQVLFNQVDGSF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g03357 543 Pfam PPR repeat 179 206 IPR002885 -
Vivi7g03357 543 Pfam PPR repeat 392 418 IPR002885 -
Vivi7g03357 543 Pfam PPR repeat 356 379 IPR002885 -
Vivi7g03357 543 SUPERFAMILY TPR-like 220 414 IPR011990 GO:0005515
Vivi7g03357 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Vivi7g03357 543 FunFam Pentatricopeptide repeat-containing protein 88 232 - -
Vivi7g03357 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vivi7g03357 543 Gene3D Tetratricopeptide repeat domain 317 533 IPR011990 GO:0005515
Vivi7g03357 543 Gene3D Tetratricopeptide repeat domain 113 316 IPR011990 GO:0005515
Vivi7g03357 543 NCBIfam pentatricopeptide repeat 215 246 IPR002885 -
Vivi7g03357 543 NCBIfam pentatricopeptide repeat 179 208 IPR002885 -
Vivi7g03357 543 NCBIfam pentatricopeptide repeat 248 275 IPR002885 -
Vivi7g03357 543 Pfam PPR repeat family 215 257 IPR002885 -
Vivi7g03357 543 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 276 IPR002885 -
Vivi7g03357 543 FunFam Pentatricopeptide repeat-containing protein 233 353 - -
Vivi7g03357 543 PANTHER OS12G0527900 PROTEIN 64 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g03357 Vivi-Chr7 99170070 99172420 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g03357 8 530 EF-hand Containing Proteins AT1G02150 54.302 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g03357 - - tpra:123882972 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g03357 7 99170070 99172420 Vivi7g03357 7 99170070 99172420 ECH