Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0918 ATGAGTCTCCTTCAAATTCAATCCTCTCCTCATAACCAAACCCTCCTTTCTCTCTCTTTCTCATCTTCCCTCTCCCATTCCTCCTCACTCCACTTCAACCACTCTTCTTCTTCCTCCACCACTCTCACCCATGCTCACACGTGCTTCCACCCTCGCCTCTCGGTGGTCACGTGCTCCATCTCCAACATCCACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATCGTGCGCTGGAACGACGTCTACCGCAGGATATCTCTCAACCAAAACCCCCAAGTGGGGTCCGCAGAGGTGCTCAACCAGTGGGAGAACGAAGGGAGGCACCTCACGAAGTGGGAGCTTTCAAGAGTCGTTAAAGAGTTGAGGAAGTACAAGAGATTTCCAAGAGCCCTCGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCCGAGAGTGATGCAGCAATTCAGTTAGATTTAATTGCAAAAGTTCGTGGAGTTTCTAGTGCAGAAGCATTCTTTCTGAGTCTGGAAGATAAGTTAAAAGATAAGAGGACTTATGGTGCCCTGTTGAATGTATACGTGCATTCTAGATCGAAGGAGAAGGCAGAATCTTTATTTGATACTATGAGGAGTAAAGGGTATGTAATACATGCCCTACCAATTAATGTAATGATGACTCTGTACATGAACCTTAATGAATATGCTAAAGTTGATATGCTGGCTTCTGAAATGATGGAAAAGAACATTCAGCTAGACATCTATACATATAATATCTGGTTATCTTCGTGTGGATCTCAAGGATCAGTCGAAAAGATGGAACAAGTGTTTGAACAAATGGAAAGGGATCCTACCATTGTCCCTAACTGGTCTACATTCAGCACATTGGCTTCGATGTACATTAGGATGAATCAGAATGAAAAGGCAGAAAAGTGCTTAAGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGAAGTGTTGGAAAGAAAGACGAAGTGTATCGTGTGTGGAATACTTACAAATCAATTTTTCCAAGAATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATCGAGGGTGCAGAAAAACTATATGAGGAATGGATTTCAGTAAAGTCAAGTTATGATCCTAGAATTGGAAACCTTCTCATGGGCTGGTATGTTAAGAAAGATGACACAGATAAAGCTTTGAGTTTCTTTGAGCAGATATCAAATGATGGCTGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAAGCCCTGTCCTGCTTGAAAGAAGCATTTATGGTTGCTGGTGGTTCAAAGAGTTGGAGACCAAAGCCCTCATACTTGTCTGCATTCCTTGAGCTTTGTCAGGAGCAAAATGACATGGAAAGTGCTGAGGTTTTAATTGGACTGCTGAGGCAGTCAAAATTTAGTAAAATTAAAGTTTATGCATCTATCATTGGCTCACCTGATTGTACCATTGACAATGGTGAATTGCAAAGCAAGATTGATATAACTGATAGAACTGATGATGCTGTTGACAGTGAAAACATGGATGATGACTCTCAAATGTTGTTGAACCAACTAGATAGTAGATTTTGA 1668 0.4161 MSLLQIQSSPHNQTLLSLSFSSSLSHSSSLHFNHSSSSSTTLTHAHTCFHPRLSVVTCSISNIHSYGTVDYERRPIVRWNDVYRRISLNQNPQVGSAEVLNQWENEGRHLTKWELSRVVKELRKYKRFPRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHALPINVMMTLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMERDPTIVPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKSIFPRIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPRIGNLLMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISEALSCLKEAFMVAGGSKSWRPKPSYLSAFLELCQEQNDMESAEVLIGLLRQSKFSKIKVYASIIGSPDCTIDNGELQSKIDITDRTDDAVDSENMDDDSQMLLNQLDSRF* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0918 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Gso3g0918 555 PANTHER OS12G0527900 PROTEIN 46 511 - -
Gso3g0918 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 281 IPR002885 -
Gso3g0918 555 SUPERFAMILY TPR-like 76 403 IPR011990 GO:0005515
Gso3g0918 555 Pfam Pentatricopeptide repeat domain 240 298 IPR002885 -
Gso3g0918 555 Gene3D Tetratricopeptide repeat domain 111 356 IPR011990 GO:0005515
Gso3g0918 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Gso3g0918 555 Gene3D Tetratricopeptide repeat domain 359 515 IPR011990 GO:0005515
Gso3g0918 555 TIGRFAM PPR: pentatricopeptide repeat domain 184 214 IPR002885 -
Gso3g0918 555 TIGRFAM PPR: pentatricopeptide repeat domain 397 427 IPR002885 -
Gso3g0918 555 TIGRFAM PPR: pentatricopeptide repeat domain 253 287 IPR002885 -
Gso3g0918 555 Pfam PPR repeat 361 385 IPR002885 -
Gso3g0918 555 Pfam PPR repeat 397 424 IPR002885 -
Gso3g0918 555 Pfam PPR repeat 184 212 IPR002885 -
Gso3g0918 555 PANTHER OSJNBB0038F03.9 PROTEIN 46 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0918 Gso-Chr3 32773791 32777928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g0918 37 523 EF-hand Containing Proteins AT1G02150 59.960 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0918 - - gmx:100780408 1068.53