Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo7g01967 ATGAGTCTCCTTCGAATTCAATCCGCTCTGCACAACCAAACCCTTTCTCTCTCTTTCTCATCTTCCCTCTCCTATTCCTCCTCACTCCACTTCAAGCACTCTTCTTCCACTACTCTCACCCACGGTCACACGCAGAGCAAGTGCTACCCTCGGCTCTCGGTGACGTGTTCCATCTCGAAGATCCACAGCTACGGCACCGTCGACTACGAGCGCCGCCCCATCGTGCGCTGGAACGACGTCTACCGCAGGATATCGCTCAACCAAAACCCCGAAGTGGGGTCCGCCGATGTGCTCAACCAGTGGGAGAACGAAGGGAGGCACCTCACAAAATGGGAACTTTCCAGAGTCGTTAAAGAGTTGAGGAAGTACAAGAGATTTCGAAGAGCCCTTGAGGTATATGATTGGATGAACAATAGACCAGAGCGGTTTAGAGTTTCTGAGAGTGACGCAGCCATTCAGTTAGATCTAATTGCAAAAGTTCGTGGAGTTTCTAGTGCGGAAGCATTCTTTCTGAGTCTGGAAGATAAGTTAAAAGATAAGAGGACTTATGGTGCCCTTTTGAATGTATACGTGCATTCTAGATCGAAGGAAAAGGCAGAATCTTTACTCGATACAATGAGGAGTAAAGGGTATGTAATACATGCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAGGTTGATATGTTGGTTTCTGAAATGATGGCAAAAAACATACAGCTAGATATCTATACATATAATATCTGGTTATCTTCTTGTGGATCTCAAGGATCAGTAGAAAAGATGGAACAAGTGTTTGAACAGATGGAAAAGGATCCTACCATTGTTCCTAACTGGTCTACATTCAGCACAATGGCTTCAATGTACATTAGGATGGATCAGAATGAAAAAGCAGAAGAGTGCTTAAGAAAGGTTGAGGGTAGAATTAAAGGTCGAGATAGAATACCTTTTCATTATCTCCTGAGTTTATATGGAAGTGTTGGAAAGAAAGATGAAGTGTATCGTGTGTGGAATACATACAAATCAATTTTTCCAAGTATACCAAACTTGGGATACCATGCTATTATTTCTTCTCTGGTTAAATTGGATGATATTGAGGGTGCAGAAAAACTCTATGAGGAATGGATTTCAGTAAAGTCGAGTTATGATCCTAGAATAGGAAACCTTCTCATAGGCTGGTACATTAAGCAAGGGAATACAGATAAAGCTTTGAGTTTCTTTGAGCAGATATCGAAGGATGGCTGCATTCCAAATTCAAATACATGGGAGATTCTTTCTGAGGGCCACATTGCAGATAAGAGGATTTCTGAAGCCCTGTCCTGCTTGAAAGAAGCCTTTATGGCTGCTGGTGGTTCAAAGAGTTGGAGACCAAAGCCCTCAAACTTGTCTGCATTCCTTGACCTTTGTCAAGAGCAAGATGACATGGAAAGTGTTGAGGTTTTAATTGGATTGCTGAGGCAGTCAAGATTTAGTAAAAATAAAGTTTATGCATCTCTCATTGGCTCATCTGATGGTACCATTGACAAAGGTGAATTGCCAAGCATGATTGATACAGCTGATAGAACCGATGATGCGGTTGACAGTGAAAACATGGATGGTGACTCTCAAATGTTGTTGAACCAACTAGATAGTAGCTTTTGA 1662 0.4194 MSLLRIQSALHNQTLSLSFSSSLSYSSSLHFKHSSSTTLTHGHTQSKCYPRLSVTCSISKIHSYGTVDYERRPIVRWNDVYRRISLNQNPEVGSADVLNQWENEGRHLTKWELSRVVKELRKYKRFRRALEVYDWMNNRPERFRVSESDAAIQLDLIAKVRGVSSAEAFFLSLEDKLKDKRTYGALLNVYVHSRSKEKAESLLDTMRSKGYVIHALPFNVMMTLYMNLKDYDKVDMLVSEMMAKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMEKDPTIVPNWSTFSTMASMYIRMDQNEKAEECLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYRVWNTYKSIFPSIPNLGYHAIISSLVKLDDIEGAEKLYEEWISVKSSYDPRIGNLLIGWYIKQGNTDKALSFFEQISKDGCIPNSNTWEILSEGHIADKRISEALSCLKEAFMAAGGSKSWRPKPSNLSAFLDLCQEQDDMESVEVLIGLLRQSRFSKNKVYASLIGSSDGTIDKGELPSMIDTADRTDDAVDSENMDGDSQMLLNQLDSSF 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo7g01967 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Pumo7g01967 553 FunFam Pentatricopeptide repeat-containing protein 91 235 - -
Pumo7g01967 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 279 IPR002885 -
Pumo7g01967 553 PANTHER OS12G0527900 PROTEIN 29 507 - -
Pumo7g01967 553 SUPERFAMILY TPR-like 286 417 IPR011990 GO:0005515
Pumo7g01967 553 FunFam Pentatricopeptide repeat-containing protein 357 541 - -
Pumo7g01967 553 Gene3D Tetratricopeptide repeat domain 356 521 IPR011990 GO:0005515
Pumo7g01967 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Pumo7g01967 553 Gene3D Tetratricopeptide repeat domain 260 355 IPR011990 GO:0005515
Pumo7g01967 553 NCBIfam pentatricopeptide repeat 395 425 IPR002885 -
Pumo7g01967 553 NCBIfam pentatricopeptide repeat 251 285 IPR002885 -
Pumo7g01967 553 NCBIfam pentatricopeptide repeat 218 249 IPR002885 -
Pumo7g01967 553 NCBIfam pentatricopeptide repeat 182 212 IPR002885 -
Pumo7g01967 553 FunFam Pentatricopeptide repeat-containing protein 236 356 - -
Pumo7g01967 553 Pfam Pentatricopeptide repeat domain 237 296 IPR002885 -
Pumo7g01967 553 Gene3D Tetratricopeptide repeat domain 87 259 IPR011990 GO:0005515
Pumo7g01967 553 Pfam PPR repeat 359 383 IPR002885 -
Pumo7g01967 553 Pfam PPR repeat 182 210 IPR002885 -
Pumo7g01967 553 Pfam PPR repeat 395 422 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo7g01967 Pumo-Chr7 53008766 53011748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo7g01967 6 519 EF-hand Containing Proteins AT1G02150 59.223 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo7g01967 - - gmx:100780408 961.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo7g01967 7 53008766 53011748 Pumo7g01967 7 53008766 53011748 ECH