Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10203 ATGATGCACCTTCAATCCCCTTTGCAGAACCAAAACGTTTCTCTTTCTCTTTCATCTTCTCCCTGCTATTCTTCATCACTTCCCTTCAAGCTCTCCACTCACACCCTTGGCCAGACACAGAGGGTGTGTTACCAGAGACTCTCTGTCACGTGTTCCATCTCAAAGATCCACAGTTATGGGACCGTAGACTACGAACGCAGACCCATTGTCAGGTGGAATGACATATACAAGAGGATATCGTTGATGCAAAACCCTGAACTCGGTTCTTCCTCTGTGTTGAATCAGTGGGAGAATGAAGGGAAGAACCTCACAAAATGGGAACTTTGCAGGGTGGTCAAAGAGTTAAGGAAGTACAGGAGACATGCGAGAGCTCTTGAGGTATATGAATGGATGAACAATAGACCAGAGAGGTTTAGAGTATCTGCGAGTGACACAGCAATTCAGTTAGATCTAATTGCAAAAGTTCGTGGAGTTTCTAGTGCAGAAAGATTTTTTCTGAACCTGACAGGTAAGTTAAAAGAGAAGAGGACATATGGTTCCCTCTTGAATGTATATGTGCACTCCAGATTGAAGGAAAAGGCAGAAAATTTACTGGACACAATGAGGAGTAAAGGGTATGTAATACATTCACTACCATTTAATGTAATGATGACTCTGTACATGAACCTTAAGGAATATGATAAAGTTGATATGTTGGTTTCAGAAATGAAAGAGAAAAATGTACAGCTCGATATCTATTCATATAATATCTGGTTATCTTCTTCTGGATCTCAAGGATCAGTAGAAAAGATGGAACAAGTGTTTGAGGAGATGGCAAAGGATCCAACCATTGTCCCTAACTGGACTACATTCAGCACAATGGCTACAATGTACATTAAGATGGATCAATTTGAAAAAGCAGAGGAGTGCTTAAGAAAGGTTGAGAGCAGAATTAAAGGCCGAGATAGAATTCCTTTTCATTATCTCTTGAGTTTGTATGGAAGTGTTGGAAACAAGGACGAAGTTTATCGTGTATGGAATACCTATAAATCTATTTTTCCAAGTATACCGAACTTGGGATACCATGCTATTATTTCTTCTCTGGTCAGAATGGATGATATTGAGGGTGCAGAACAGCTTTATGAGGAATGGGTTTCAGTAAGGTCATCTAATGATGCTAGAATAGGAAACCTTCTGATAGGCTGGTATGTTAAGAATGGCAATACTGATAAAGCTTTGAGTTTCTTTCAGCACATGACTGAAGAAGGTGGATATGCAAATTCTAATACATGGGAGCTTCTTTCTGAGGGCCATATTGCAGATAAGAGGATTTCTGAGGCCCTGTCCTGCTTGGAAAAAGCTTTTACAACTGATGGTTCAAAGAGTTGGAGACCAAGGCCCTTAAACTTGTCTGCATTCTTTAAGCTTTGTGAAGACCAAGATGACATGGCGAGTGCTGAGGTTTTAATTGGGTTGTTGAGGCAGTCAGGATTTCTTAAAGATGAAGCTTATGCATCACTCATTGGCTTACCTGATGCTACCATTGGTAAAGGTGAATTGTCAAGCACGATTGATACAGAAGATAGAACTGATAATATTGTTGACAGTGAAAACGCGGATGATGACTCTCAAATGTTGTTCAACCAACTGGAGAGTAGCATTTGA 1644 0.4021 MMHLQSPLQNQNVSLSLSSSPCYSSSLPFKLSTHTLGQTQRVCYQRLSVTCSISKIHSYGTVDYERRPIVRWNDIYKRISLMQNPELGSSSVLNQWENEGKNLTKWELCRVVKELRKYRRHARALEVYEWMNNRPERFRVSASDTAIQLDLIAKVRGVSSAERFFLNLTGKLKEKRTYGSLLNVYVHSRLKEKAENLLDTMRSKGYVIHSLPFNVMMTLYMNLKEYDKVDMLVSEMKEKNVQLDIYSYNIWLSSSGSQGSVEKMEQVFEEMAKDPTIVPNWTTFSTMATMYIKMDQFEKAEECLRKVESRIKGRDRIPFHYLLSLYGSVGNKDEVYRVWNTYKSIFPSIPNLGYHAIISSLVRMDDIEGAEQLYEEWVSVRSSNDARIGNLLIGWYVKNGNTDKALSFFQHMTEEGGYANSNTWELLSEGHIADKRISEALSCLEKAFTTDGSKSWRPRPLNLSAFFKLCEDQDDMASAEVLIGLLRQSGFLKDEAYASLIGLPDATIGKGELSSTIDTEDRTDNIVDSENADDDSQMLFNQLESSI. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10203 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 274 IPR002885 -
Seca4g10203 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Seca4g10203 547 FunFam Pentatricopeptide repeat-containing protein 231 351 - -
Seca4g10203 547 FunFam Pentatricopeptide repeat-containing protein 352 535 - -
Seca4g10203 547 SUPERFAMILY TPR-like 283 451 IPR011990 GO:0005515
Seca4g10203 547 PANTHER OS12G0527900 PROTEIN 64 501 - -
Seca4g10203 547 Gene3D Tetratricopeptide repeat domain 77 221 IPR011990 GO:0005515
Seca4g10203 547 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Seca4g10203 547 Pfam PPR repeat 390 416 IPR002885 -
Seca4g10203 547 Pfam PPR repeat 177 205 IPR002885 -
Seca4g10203 547 Pfam PPR repeat 354 378 IPR002885 -
Seca4g10203 547 FunFam Pentatricopeptide repeat-containing protein 86 230 - -
Seca4g10203 547 NCBIfam pentatricopeptide repeat 213 244 IPR002885 -
Seca4g10203 547 NCBIfam pentatricopeptide repeat 246 280 IPR002885 -
Seca4g10203 547 NCBIfam pentatricopeptide repeat 390 418 IPR002885 -
Seca4g10203 547 NCBIfam pentatricopeptide repeat 177 207 IPR002885 -
Seca4g10203 547 Gene3D Tetratricopeptide repeat domain 349 457 IPR011990 GO:0005515
Seca4g10203 547 Gene3D Tetratricopeptide repeat domain 231 348 IPR011990 GO:0005515
Seca4g10203 547 Pfam Pentatricopeptide repeat domain 232 291 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10203 Seca-Chr4 236530981 236535203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10203 2 501 EF-hand Containing Proteins AT1G02150 63.200 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10203 - - gmx:100780408 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10203 4 236530981 236535203 Seca4g10203 4 236530981 236535203 ECH