Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01021 ATGTTCTGCGCGCGTCCCACCAATACGGTGACGCATCCGTCTTTCAAATCTTCTTCTGAAATGCAAACCTCCATTTCCCCTTTTCTCTCTCTTCACCCTCAGTCTCACTCGTTCCTTCCTTCCACGCGCCACACTCTCTCACTCTCCGCGCCACAAAGCTACGCGCCTCCCTCTTCGCCGCCGCTACTGATCCACCCCAGACCGCCGCGTTTCGATTATGCCCCTTCCTACGAGACGCGTCCGAACGGTATATACCTCAAGCGCAGGAAGGTAGAACTTGCGCGCCAAGTGTTTGATGAAATTCCCAAACGAGACGTTAATGCGTGGAGTACCATGATCACCGGTTTCGCGCGCAATGGAATGCTGAGGGAAGTTTGGGAGTACACGAGGTTGATGTTAGAGGAAGGAATAAATCCAAATTTGGTGGTAATGACAGTTATTCTTGATGTCATAGGAAAATTTGGTGGTCGAAATTTAGGTAGGGAGGCTCATGGTTTTGTGTTGAAGATGAATATTTATTACAAGGAATTGTCGATTCAATCGGCGTTGATTGATATGTATTGGAACTGTGGTGATGTTGGCTCAGGGAGCCGGGTTTTGTATAGTGTGATGAAGAGGTATGGTGATTGTTGGATTGGATTGATGTCGGGTAGACTTGAGGTGGAAATGAGGTCTATTGTTCGGTTGAAGAGGTTCCGGCCTGGTGCTGTTGCGGTTGCTTCTTTGCTTCCGATTTGTGCACAATTGAGGGCTCTGAAGCAAGGGAAGGAGATTCATGCTTATGCTTTGAGACATTGGCTTCTGCCTAATGTGCCGATAGTGTCTTCCTTGATGGTGTTGTACTCCAAGTGTGGCATGATTGAGTATTCCTTGAGATTGTTTGATGGAATGGAACAGAAGAACGTGGTTTCATGGACTGCCATGATTGATTCGTGTGTTGAAAATGGACATTTGTGTGAAGCAACTGGTGTCATGAGGTCAATGGTATTGACAGAGCATAGACCGGATACAGTTACCGTGGCTAGGATGTTGCGTGTTTGTCAGGAGCTGAAAGTTTTAAAGCTTGGGAAGGAGGTTCATGGGCAGGTATTGAAAAGGGGGTTTGTGTCGGTCCATTATGTTGCTGCCGAACTGATTGATATGTATGGAATTTGTGGATATGTTGATAAGGCGAAGTTGGTGTTTCGTGCAATTCCTGTAAAAGGTTCAATGGCATGGAGTGCTCTTATAAGGGCCTATGGGTACAAAGAATGGTATCAAGAAGCAGTTGACCTTTTTGATAACATGATATCAAATGGTTGCTCTCCAAACCGCTTCACTTTTGAAGCTGTTCTATCTATTTGTGATAGAGCTGGATTTGTTGAAGATGCTTTTAGGATATTTGATTTGATGTCCAGATATAAAATTGATGCATCCGAGGAACACTGCACTTGCATGATTCGACTTCTTACCCGCTATGGCAAACTAGATGAGAGACTATCCAGATTTGTGTCCTTGCAAGCCAGTGATTATTCCTCCAAAAGAAGTCTCAATAATTTACCCTCAAAGAAATTGTCACCTGGAGGAACAAACTGGCGACCATTTCATCCTTCTTAA 1596 0.4499 MFCARPTNTVTHPSFKSSSEMQTSISPFLSLHPQSHSFLPSTRHTLSLSAPQSYAPPSSPPLLIHPRPPRFDYAPSYETRPNGIYLKRRKVELARQVFDEIPKRDVNAWSTMITGFARNGMLREVWEYTRLMLEEGINPNLVVMTVILDVIGKFGGRNLGREAHGFVLKMNIYYKELSIQSALIDMYWNCGDVGSGSRVLYSVMKRYGDCWIGLMSGRLEVEMRSIVRLKRFRPGAVAVASLLPICAQLRALKQGKEIHAYALRHWLLPNVPIVSSLMVLYSKCGMIEYSLRLFDGMEQKNVVSWTAMIDSCVENGHLCEATGVMRSMVLTEHRPDTVTVARMLRVCQELKVLKLGKEVHGQVLKRGFVSVHYVAAELIDMYGICGYVDKAKLVFRAIPVKGSMAWSALIRAYGYKEWYQEAVDLFDNMISNGCSPNRFTFEAVLSICDRAGFVEDAFRIFDLMSRYKIDASEEHCTCMIRLLTRYGKLDERLSRFVSLQASDYSSKRSLNNLPSKKLSPGGTNWRPFHPS 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01021 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Gma03g01021 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Gma03g01021 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gma03g01021 531 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Gma03g01021 531 Pfam PPR repeat family 403 446 IPR002885 -
Gma03g01021 531 Gene3D Tetratricopeptide repeat domain 218 370 IPR011990 GO:0005515
Gma03g01021 531 PANTHER - 84 502 - -
Gma03g01021 531 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Gma03g01021 531 TIGRFAM PPR: pentatricopeptide repeat domain 405 437 IPR002885 -
Gma03g01021 531 TIGRFAM PPR: pentatricopeptide repeat domain 108 140 IPR002885 -
Gma03g01021 531 MobiDBLite consensus disorder prediction 512 531 - -
Gma03g01021 531 Gene3D Tetratricopeptide repeat domain 372 512 IPR011990 GO:0005515
Gma03g01021 531 Gene3D Tetratricopeptide repeat domain 83 217 IPR011990 GO:0005515
Gma03g01021 531 Pfam PPR repeat 275 302 IPR002885 -
Gma03g01021 531 Pfam PPR repeat 108 137 IPR002885 -
Gma03g01021 531 Pfam PPR repeat 303 329 IPR002885 -
Gma03g01021 531 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 84 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01021 Gma-Chr3 34236666 34239570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01021 92 491 Glycoside Hydrolase AT3G49170 24.939 1.76e-42 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01021 - - gmx:100780947 987.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01021 03 34236666 34239570 Gma18g02295 18 56640730 56644581 PCT
Gma03g01021 03 34236666 34239570 Gma09g02237 09 47959806 47963692 PCT