Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01539 ATGGTTACAACTAAGTGCAACATCTCTGGTGCTCCTCCTTCACTCCTTCCAATCTCAATTCACAGGTACCAAAACTCAAATCAGTATCACTCCCCCAATTTGAAATTCACACAACACCAACCAAAACCAAATGTGTCTTACGTTCAACATGAACTGCACATCAACCTCAATGCAACACAACAACTCCATTGCCACTTCATCAAAACCAGTTCCAATTGCAGTTACCAAGTCCCCTTTGCTGCACTTGAATCCTACTCTAGCAATGCAGCAATGCATAGCTTCCTAATAACATCTTACATCAAGAACAACTGCCCTCAAGACGCAATGAAAATCTATGGCTATATGCGTAGAACAGACACTGAAGTGGACAATTTTATCATACCATCGGTTCTCAAAGCATGCTGTCTTCTCCCTTCATTGCTGCTAGGACAAGAGGTGCATGGTTTTGTGGTGAAAAATGGATTTCAAGAGGATGTTTTTGTGTGTAATGCTTTAATCATGATGTACAGTGAGGTAGGAAGCTTGGAATCGGCACGGCTATTGTTTGATAAGATTGAGAACAAGGATGCTGTTTCTTGGAGTACTATGATAAGGAGCTATGATAGAAGTGGGTTGGTTGATGAAGCATTGAACCTCTTGAGAGATATGCATGTTATGGGAGCGAAGCCCAGTGAAATTGCAATGATAAGCATCACACATGTCTTTGCACAACTTGCTGATTTGAAATTGGGGAAAGCCATGCATGCTTATGTGACAAGGAATGGGAAGTATGGAAAATCAGGAGTTCCTTTGAGTACTGCTTTGATAGATATGTATGCTAAATGTGAAAATTTAGCTTATGCAAGAAGGCTTTTTGATGGCTTGTATGAGGCTAGTATCATTTCATGGACTGCTATGATTGCAGCCTACATTCATTGCAATAATTTGAATGAAGGTGTGAGATTGTTTGTAAAAATGCTTGGAGAGGGTGTGTTTCCAAATGAGATTACAATCCTTAGTTTGGTCAAAGAATGTGGCACAGTAGGAGCTCTAGAACTAGGCAAGTGGTTACATGCTTGCACATTAAGAAGTGGGTTTACCTTGTCTTTGGTTCTAGCCACAGCTTTTATTGATATGTATGGCAAATGTGGTGACGCTAGGAGTGCAAGATCTGTTTTTGGTAGCTTCAAGAGGAAAGATTTAATGATGTGGAGTGCCATGATTTCAGCTTATGCACAAAACAATTGTATAGATGAGGCCTATGATACCTTTGTTCACATGACTGGTTGTGGAATAAGGCCAAATGAGATAACCATGGTTAGCCTCCTTATGCTATGTGCAAAAGCTGGATCACTTGAAATGGGCAAGTGGATCCATTCATACATAGACAAGCAAGGAATTAAAGCAGATATGATTCTTATAACTTCTTTGGTTGACATGTATGCCAAGTGTGGAGACATAGATGCAGCTCATAGGCTTTTTGATGCAGCCTTGGACCGTGACGTTTCAATGTGGAATGCCATGATATCTGGTTTTGCAATGCATGGTCATGGTGAGTCAGCATTGGAACTCTTGGAAGAAATGGAAGCACTAGGAGTTACCCCTAATGACATCACATTCATTGGAGCTCTTCATGCTTGTAGCCACTCTGGAATGTTGAAAGAAGGGAAGAGGCTGTTTCACAAAATGGTTCATGAATTTGGTTTTGCACCAAAAGTTGAGCACTATGGTTGTATGGTGGATCTTCTTGGTAGAGCTGGATTGCTTGATGAAGCAAAGGAACTAATTGTGAACATGCCTATGAGGCCAAACATGGCTGTGTTGGGATCACTTCTTGCGGCATGCAAGGTTCACAAGAATATCAAACTTGGGGAATGGACAGCAAAGCAGTTTCTCTCATTGGAACCCCACAAGTGTGGATATAATGTTTTGATGTCAAACATATATGCATCAGAAAAAAGATGGGATGATGTTGCATATATAAGGAGAGGTATGAAGGATGAAGGAATTGCTAAGGAACCAGGTGTTAGCTCCTTTGAGGTGAATGGATCATTTCATGAGTTCATAATGGGAGATAGGGAACACCCAGATGCCAAAAAAATTTATGAAATGATTGATGAGATGAGAGAAAAACTGGAAGATGCTGGATACACCCCAGATGTGTCTTCTGTTCTGCTGAACATAGACAATGAGGAGAAAGAAACTGCACTCAACTATCATAGTGAGAAACTGGCAATGGCATATGGATTGATTAGCACAGCTCCTGGTGTTCCAATTAGAATTGTGAAGAATCTTAGAATTTGTGATGATTGTCATAATGCAACCAAGTTACTGTCCAAGATTTATGGGAGGGAAATCATAGTGAGGGACCGCAATCGTTTTCATCAATTTAAGGAAGGATCTTGTTCTTGTAGTGATTATTGGTAG 2406 0.4048 MVTTKCNISGAPPSLLPISIHRYQNSNQYHSPNLKFTQHQPKPNVSYVQHELHINLNATQQLHCHFIKTSSNCSYQVPFAALESYSSNAAMHSFLITSYIKNNCPQDAMKIYGYMRRTDTEVDNFIIPSVLKACCLLPSLLLGQEVHGFVVKNGFQEDVFVCNALIMMYSEVGSLESARLLFDKIENKDAVSWSTMIRSYDRSGLVDEALNLLRDMHVMGAKPSEIAMISITHVFAQLADLKLGKAMHAYVTRNGKYGKSGVPLSTALIDMYAKCENLAYARRLFDGLYEASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGVFPNEITILSLVKECGTVGALELGKWLHACTLRSGFTLSLVLATAFIDMYGKCGDARSARSVFGSFKRKDLMMWSAMISAYAQNNCIDEAYDTFVHMTGCGIRPNEITMVSLLMLCAKAGSLEMGKWIHSYIDKQGIKADMILITSLVDMYAKCGDIDAAHRLFDAALDRDVSMWNAMISGFAMHGHGESALELLEEMEALGVTPNDITFIGALHACSHSGMLKEGKRLFHKMVHEFGFAPKVEHYGCMVDLLGRAGLLDEAKELIVNMPMRPNMAVLGSLLAACKVHKNIKLGEWTAKQFLSLEPHKCGYNVLMSNIYASEKRWDDVAYIRRGMKDEGIAKEPGVSSFEVNGSFHEFIMGDREHPDAKKIYEMIDEMREKLEDAGYTPDVSSVLLNIDNEEKETALNYHSEKLAMAYGLISTAPGVPIRIVKNLRICDDCHNATKLLSKIYGREIIVRDRNRFHQFKEGSCSCSDYW 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01539 801 Pfam PPR repeat family 494 540 IPR002885 -
Cca01g01539 801 Pfam PPR repeat family 292 338 IPR002885 -
Cca01g01539 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Cca01g01539 801 Pfam DYW family of nucleic acid deaminases 709 801 IPR032867 GO:0008270
Cca01g01539 801 Gene3D Tetratricopeptide repeat domain 258 342 IPR011990 GO:0005515
Cca01g01539 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Cca01g01539 801 SUPERFAMILY TPR-like 361 523 IPR011990 GO:0005515
Cca01g01539 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Cca01g01539 801 PANTHER BNAC02G09320D PROTEIN 225 719 - -
Cca01g01539 801 PANTHER BNAC02G09320D PROTEIN 90 450 - -
Cca01g01539 801 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Cca01g01539 801 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Cca01g01539 801 TIGRFAM PPR: pentatricopeptide repeat domain 191 224 IPR002885 -
Cca01g01539 801 TIGRFAM PPR: pentatricopeptide repeat domain 497 529 IPR002885 -
Cca01g01539 801 Gene3D Tetratricopeptide repeat domain 467 736 IPR011990 GO:0005515
Cca01g01539 801 Gene3D Tetratricopeptide repeat domain 343 461 IPR011990 GO:0005515
Cca01g01539 801 Gene3D Tetratricopeptide repeat domain 89 257 IPR011990 GO:0005515
Cca01g01539 801 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca01g01539 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 90 450 - -
Cca01g01539 801 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 225 719 - -
Cca01g01539 801 Pfam PPR repeat 396 425 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 468 489 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 191 220 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 367 393 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 93 117 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 161 188 IPR002885 -
Cca01g01539 801 Pfam PPR repeat 568 592 IPR002885 -
Cca01g01539 801 Pfam E motif 611 671 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01539 Cca-Chr1 33774086 33776844 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01539 93 801 Glycoside Hydrolase AT3G49170 36.111 8.77e-158 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01539 - - gmx:100782031 1404.81