Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip09g00774 | ATGGAAACCACAGTTCCAATTCCAACCTCAGCTGCAACTCCAACTTCATCTCTCTCTCTTTCTCTTTTCTCTTCAAACACCAACCGCACCTCTCTCCAACTCCCCTTCAACTCTAAACCTCCTCCTTCCATCATCACACAGCAACAACAACCACCACCCAATAACCCTAAACTCAAATTTGCATTTCAACTACAAAACGACGCCGTTTCGGGCAAGTCGCGAACGACGCTATTGGGAGGAGCAGAATTGGATGTGTCTAGCTTTGTGAATGTTATTGAAAGCTTGGGTGATGCAAATGCGGTTCAAGAAGGGTTTAAGGTTCATGCCATTTTGGTTAAGAACGGTTATTTTGATGCTAGTTTATATATTAAGGTCTGTTTGGTTAGAATGTATTTTAGGTGTGGGAAAGTTGAGCTTGCGCGGAGGGTGTTTGATGAAAGTTCTGAGAGAGATGTTTCTTTGTGGGGTGCCATGGTTGCTGGTTTTGCACACCATGGGATGCGGATTGAAGCATTGCAGTATGTGAGGTTGATGGTAGATGAAGGAATAATGCCGAATTCGGCTTTGATGATGGGTGTTCTTCCCTTAGTTGGGGAGCTTGGCGCATTGCGGATAGGTCAAGAGGCTCATGCTTACTTAGTGAAGAAGAAATTTTACTATGAGCAAGTGCGAATTCGAACTGCATTGGTTGATATGTACAGTAAATGTGGGGATGTTGGTTCGGGGAGGCGAGTTTTGTCTAGCTTGGTAGAGAGAGGTATAAGTTGTTGGAGTGCTCTGATTGCGGGTTCTGTCTCGAGTGGGGGGTTTCAAAAGGCGGTGAAGTCCATGGTTAGAATGCAGCGAGAAGGGTTCCGGCCTAGTCATGTCAGTGTTGCTTCTATCCTTTCGGTTTGTGCACAGTCGAGGGCTCTGAAACGGGGGAAGGAGATTCATGCTTATGCTTTAAAACATTGGTTTCTGCCTCATGTCTCTATAGCTTCTTCGTTGATGGTGTTGTACTCTAAGTGTGGTTTGATTGAGTATTGTAGAAACCTATTTGATGGTATGGAACGAAGGAATGTGATCCTGTGGACAGCTATGTTTGATGCATATGTGGAAAATGGGTGTTTTCCTGAAGCATTTGGTGTCCTAAGGTCAATGCAATTGACAGAGTATAGGCCGGACACAGTTACCATGGCGAGGATGTTAAGTCTTTGCAGCAAACTAAAACTTGTAAAGCTTGGTAAGGAGATTCATGTGCAGTGCTTGATAAAGGGTTGTGCTCCGAACCGCTTTACTTTTGAAGCTGTTCTTTCTGTATGTGATAAAGCTGGTTTTGTTGAAGAGGCAATTAGGATCTTCAATTTACTGTCAAGCCATTCAACAGCTTCAAAGTGGATGGTTACATGCAATTCACACTTCTATGGTTCTGCTCCTTCACTTCTTCCTATCTCGGTTCGAAAGTTCCAAAGCTCTTGTGAATATCACTCCATAGCCTCTTTGAAATTCACTCAAGTCTTAGCAAAAGAGAAGACAAAACCAAAGGTGCCTCCAATCCAAAATGAACTTCACATCAACCTTGTAGAAACACAACAGCTTCATTGCCAGTTGCTCAAGAACTGTTCCGATTGCGCTTATAGACTCACTTTTCCTGCACTTAAGTCCTACTCTAGCAATGCAGCACTTTACAGCTTCTTGATAACATCTTACATTAAGAACAATTGCCCTGAAGATGCAGTGAAAATATATAACCATATGCGAAAAACCGATGCCAAAATTGACAATTTCATCATACCATCAGTTCTCAAAGCATGCTGTGTTGTCCCTTCAGCTCTGCTAGGACAAGAGGTGCATGGTTTTGTGGTCAAGAATGGATTTCATAGTGATGTTTTTGTCTGCAATGCATTGATGATGATGTACAGTGAGGCTGGAAACTTCGCATCTGCATGCCAATTATTCGATGACATTGAGAAAAGAGATGCTGTTTCTTGGAGTATTATGCTTCGAAACTATAGTCGCCACGGTATGCTCAATGAAGCATTGAACCTTGTGAGAGAAATGCATGCTATTGGAGTGAAGCCTAGTGAAATTGCAATGATAAGCATCATTCATGTAATTGCAGAACTTGCTGATATGAAATTGGGTAAAGCCATTCATGCTTATGTCACAAGGAACATGAGCTATGAGAAACCAAGTGTTCCTCTAAGTACTGCTTTGATAGATTTGTATGCTAAATGTGCAAATTTAGCTTATGCAAGAAGAATTTTTGACAATTTGTCCGCGGCAAGTATAATTTCCTGGACTGCTATGATTGCAGCCTATATCCATTGCAATGATTTGAATGAGGGTTTTAGGCTGTTTATCAAAATTCTAGATGAGGGTATGTTTCCAAATGATATCACAATCCTTAGTTTGGTCAAAGGATGCGGCGCAGCTGGAGCACTAAAACTAGGCAAGTTGTTACATGCTTTTACATTAAGAAATGGGATTGCCATGTCTTTAAATCTAGCCACTGCTTTTCTTGATATGTATGGCAAATGCAGCGATGTAAGAAGTGCACGATCTGTTTTCAATAATAGCACCAAGAACAAAGATTTAATGATGTATAGCGCCATGATTTCGGCATATGCAAAAGCTGATTGTATAGATGAGGCATTTGATATATTTGCTCAGATGACTGGATGTGGAATTAAACCAAATGAGATAACCATGGTTAGCCTCCTTTCGCTATGCGCAAAATCTGGATCACTTGAAATGGGTAAGTGGATACATTCTTACTTAGACAAACAAGGAATCAAAGCAGATATGGTTCTGAAAACATCTTTGGTGGACATGTATTCTAAGTGTGGAGACATAGATACAGCTTGTGGACTATTCGTCGAGGCCAACGACCGAGATATTTCTATGTGGAATGCCATGATATCTGGTTTTGCAATGCATGGTCATGGTAATTCAGCATTGGAACTCTTTGCTGAAATGGAAGCACAAGGAGTTATCCCTAATGACATAACATTCATTGCAGTTATTCATGCTTGTAGCCATGCCGGATTGGTTCAAGAAGGGAAGAGGCTGTTTTGCAGAATGGTTAATGAATTCAGTTTGGTCCCAAAGATTGAACACTATGGCTGTATGGTAGACCTTCTCGGTCGAGCAGGATCACTCGAAGAAGCTCAAGAACTAATTAAGGACATGCCTATGAGGCCAAACTCGGCCGTATTGGGATCTTTTCTTGCTGCTTGCAAAGTTCACAAAAATGTGAACCTTGGTGAATGGGCTGCAAAACAGTTTCTATCATTAGAACCCGAAAAATGTGGATACAATGTCCTAATGTCAAACATCTATGCTGCATCAAACAGATGGGAAAATGTTGCTGATATAAGAAGAGCTATGAAGGATGCAGGGATTCATAAAGAACCAGGTTTCAGCTCCATTGAAGTGCATGGAACGATTCATGAATTTGTAATGGGAGATAGAGAACACCCAGAAACACCAAAGATTTATGAAATGATTGCTGAGATGAGAGAAAAGCTAGAACATGCTGGATACACTCCAAATGTATCTGTTGTGCTGAAGAACATAGATATGAAGGAAAAAGAGAGTGCAGTAAATTATCACAGTGAAAAACTTGCAATGGCTTATGGTTTGATTAGCACAGGTCCTGGAATTCAGCTTCGGATTTTGAAGAATCTTAGAATTTGTGAAGACTGTCATAATGCAACAAAGTTGGTGTCTAAGATTTATGGGAGGGAGATAATTGTGAGGGATCGTAATCGCTTTCACCATTTCAAAGAAGGATTTTGTTCTTTGCCGGCTCCAGCATTTTGCGGCGGTTTTCTCTCCCTCCCTCCTCTCTCGACGCAGTCCACAGAGAATTTCTGTGTGTATCTCAAGTAG | 3876 | 0.4136 | METTVPIPTSAATPTSSLSLSLFSSNTNRTSLQLPFNSKPPPSIITQQQQPPPNNPKLKFAFQLQNDAVSGKSRTTLLGGAELDVSSFVNVIESLGDANAVQEGFKVHAILVKNGYFDASLYIKVCLVRMYFRCGKVELARRVFDESSERDVSLWGAMVAGFAHHGMRIEALQYVRLMVDEGIMPNSALMMGVLPLVGELGALRIGQEAHAYLVKKKFYYEQVRIRTALVDMYSKCGDVGSGRRVLSSLVERGISCWSALIAGSVSSGGFQKAVKSMVRMQREGFRPSHVSVASILSVCAQSRALKRGKEIHAYALKHWFLPHVSIASSLMVLYSKCGLIEYCRNLFDGMERRNVILWTAMFDAYVENGCFPEAFGVLRSMQLTEYRPDTVTMARMLSLCSKLKLVKLGKEIHVQCLIKGCAPNRFTFEAVLSVCDKAGFVEEAIRIFNLLSSHSTASKWMVTCNSHFYGSAPSLLPISVRKFQSSCEYHSIASLKFTQVLAKEKTKPKVPPIQNELHINLVETQQLHCQLLKNCSDCAYRLTFPALKSYSSNAALYSFLITSYIKNNCPEDAVKIYNHMRKTDAKIDNFIIPSVLKACCVVPSALLGQEVHGFVVKNGFHSDVFVCNALMMMYSEAGNFASACQLFDDIEKRDAVSWSIMLRNYSRHGMLNEALNLVREMHAIGVKPSEIAMISIIHVIAELADMKLGKAIHAYVTRNMSYEKPSVPLSTALIDLYAKCANLAYARRIFDNLSAASIISWTAMIAAYIHCNDLNEGFRLFIKILDEGMFPNDITILSLVKGCGAAGALKLGKLLHAFTLRNGIAMSLNLATAFLDMYGKCSDVRSARSVFNNSTKNKDLMMYSAMISAYAKADCIDEAFDIFAQMTGCGIKPNEITMVSLLSLCAKSGSLEMGKWIHSYLDKQGIKADMVLKTSLVDMYSKCGDIDTACGLFVEANDRDISMWNAMISGFAMHGHGNSALELFAEMEAQGVIPNDITFIAVIHACSHAGLVQEGKRLFCRMVNEFSLVPKIEHYGCMVDLLGRAGSLEEAQELIKDMPMRPNSAVLGSFLAACKVHKNVNLGEWAAKQFLSLEPEKCGYNVLMSNIYAASNRWENVADIRRAMKDAGIHKEPGFSSIEVHGTIHEFVMGDREHPETPKIYEMIAEMREKLEHAGYTPNVSVVLKNIDMKEKESAVNYHSEKLAMAYGLISTGPGIQLRILKNLRICEDCHNATKLVSKIYGREIIVRDRNRFHHFKEGFCSLPAPAFCGGFLSLPPLSTQSTENFCVYLK | 1291 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip09g00774 | 1291 | Pfam | PPR repeat | 256 | 285 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 759 | 788 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 626 | 653 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 934 | 955 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 126 | 150 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 1034 | 1059 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 357 | 382 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 328 | 355 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 154 | 183 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 656 | 686 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat | 557 | 582 | IPR002885 | - | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 74 | 198 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 704 | 809 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 529 | 604 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | PANTHER | - | 643 | 768 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 758 | 871 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 855 | 1184 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 643 | 768 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 758 | 871 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 84 | 301 | - | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 553 | 587 | IPR002885 | - | |
| Aip09g00774 | 1291 | PANTHER | - | 84 | 301 | - | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | IPR002885 | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 757 | 791 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat family | 960 | 1007 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | PPR repeat family | 859 | 906 | IPR002885 | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 859 | 893 | IPR002885 | - | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 605 | 687 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | Pfam | DYW family of nucleic acid deaminases | 1175 | 1262 | IPR032867 | GO:0008270 | |
| Aip09g00774 | 1291 | PANTHER | - | 535 | 669 | - | - | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 257 | 472 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 932 | 1205 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 623 | 653 | IPR002885 | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 654 | 688 | IPR002885 | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 960 | 994 | IPR002885 | - | |
| Aip09g00774 | 1291 | PANTHER | - | 855 | 1184 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 279 | 412 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 535 | 669 | - | - | |
| Aip09g00774 | 1291 | PANTHER | - | 279 | 412 | - | - | |
| Aip09g00774 | 1291 | Gene3D | Tetratricopeptide repeat domain | 810 | 925 | IPR011990 | GO:0005515 | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 151 | 185 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 862 | 895 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 997 | 1025 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 155 | 186 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 656 | 689 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 557 | 586 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 357 | 390 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 759 | 792 | IPR002885 | - | |
| Aip09g00774 | 1291 | TIGRFAM | PPR: pentatricopeptide repeat domain | 963 | 995 | IPR002885 | - | |
| Aip09g00774 | 1291 | Pfam | E motif | 1077 | 1139 | IPR046848 | - | |
| Aip09g00774 | 1291 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 354 | 388 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip09g00774 | Aip-Chr9 | 9809821 | 9818187 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip09g00774 | 38 | 599 | Glycoside Hydrolase | AT3G49170 | 23.599 | 8.37e-34 | 139 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip09g00774 | - | - | adu:107464415 | 1557.73 |