Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00097 ATGGAACAAGTTTTTGAACAAATGTCGAAGGATCCTACCGTTATCCCTAACTGGAGTACATTCAGTACAATGGCCGCAATGTACGTTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTGAAAAAGGTCGAGGGTAGGATAGTAGGTCGAGATCGAATACCTTTTCATTATCTACTTAGTATGTACGGAAGCATTGGAAACAAAGACGAAGTTTATCGCGTGTGGAATAACTATAAATCAATATTTCCAAGTGTACCTAACTTAGGATACCATGCTGTTATTTCTGCTCTCGTAAGAATGGACGATATTGAGGGTGCAGAAAAGCTTTACGAAGAATGGGTTTTGGTTAGGCCGACCGATGATTCTAGAATAGGAAACCTTCTTATAGGATGGTATCTTAATAATGGAAAATCAGATAAAGTTTTGAGTTTCTTTGAGCATATGACTGAAGGTGGTGGGTGTCCAAATTCAACAACATGGGAGCTTCTTTCTGAGGGTCATATTGCAGAAAAGAGGGTTTCAGACGCTTTGTTGTGCCTGGAAAAGGCTTTTACAACTAGTGGTTCGAAAAGTTGGAAACCGAAGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCGAGACGAAGGCAAAATGGAGAGTGCTGAGGTTTTAATTGAGTTGTTGAGGAAGTCAGGATACCATAACACTGAAGCGTATGCGTCGCTAATTAGCAAAGATGACTTGTCAAGCAAGATTGAAAGAATGAATGATATTGTCGACAGTGAAAACATGAATGGTGATGATAATGATGAGTGTCAAGTGTTGTTCAACCAAGTAGATAGTAGCTTTTGA 837 0.3931 MEQVFEQMSKDPTVIPNWSTFSTMAAMYVKMELFEKAQECLKKVEGRIVGRDRIPFHYLLSMYGSIGNKDEVYRVWNNYKSIFPSVPNLGYHAVISALVRMDDIEGAEKLYEEWVLVRPTDDSRIGNLLIGWYLNNGKSDKVLSFFEHMTEGGGCPNSTTWELLSEGHIAEKRVSDALLCLEKAFTTSGSKSWKPKPIKLAAFLKLCRDEGKMESAEVLIELLRKSGYHNTEAYASLISKDDLSSKIERMNDIVDSENMNGDDNDECQVLFNQVDSSF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00097 278 Gene3D Tetratricopeptide repeat domain 88 271 IPR011990 GO:0005515
Vifa4g00097 278 Pfam PPR repeat 127 153 IPR002885 -
Vifa4g00097 278 Pfam PPR repeat 19 45 IPR002885 -
Vifa4g00097 278 Pfam PPR repeat 91 114 IPR002885 -
Vifa4g00097 278 Gene3D Tetratricopeptide repeat domain 1 87 IPR011990 GO:0005515
Vifa4g00097 278 NCBIfam pentatricopeptide repeat 127 157 IPR002885 -
Vifa4g00097 278 PANTHER OS12G0527900 PROTEIN 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00097 Vifa-Chr4 11790023 11790859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00097 1 242 EF-hand Containing Proteins AT1G02150 53.719 9.67e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00097 - - tpra:123882972 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00097 4 11790023 11790859 Vifa4g00097 4 11790023 11790859 ECH