Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0671 . . . . . . . . . . . . . . . . . . . . . . . . . Gso17g1592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0672 . . . . . . . . . . . . . . . . . . . . Enph7g0663 . . . . . . . . . . . . . . . . . . Mal1g5205 . . . . . . Prci2g1507 . . . . . . . Sto5g1271 . . Tsu01g00922 . . . . . .
Pvu1g0673 Acco05g2784 Accr3g00263 . . . . . . Alju07g2734 . . Apr9g0748 . . Bisa05g0865 . Car04g02935 Cca05g00069 Dere05g2563 . Enph7g1336 Glsi10g1244 . Gma14g01505 Gso14g1266 Gso13g0206 . . . . . . . Lasa6g00883 . Lele26g0233 . Lele28g0239 Lja1g5782 . . . Mibi08g2437 . Phac1g00898 Phco2g00752 Prci2g0354 Psa6g0919 Pste8g02030 Pumo9g01102 Rops9g02462 Seca8g02546 Spst8g01433 . Sto5g0337 Tpr1g3079 . . . . Vimu1g02397 Viun8g00986 Vivi4g04620 Vra6g1423
Pvu1g0674 . . . . . . . . . . . Apr9g0749 . . . . Car04g02934 Cca05g00070 . . . . . . . Gso13g0205 . . . . . . . . . . . . Lja1g5783 . . . . . . . . . Pste8g02029 Pumo9g01103 Rops9g02463 Seca8g02540 Spst8g01432 . . Tpr1g3078 . . . Vifa3g04078 Vimu1g02394 Viun8g00992 Vivi4g04619 .
Pvu1g0675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0676 Acco05g2783 Accr3g00265 . . . . . . Alju07g2733 . . . . . Bisa05g0866 . . . Dere05g2562 . Enph7g1334 Glsi10g1242 . Gma14g01485 Gso14g1251 . . . . . . . . Lasa6g00884 Lele25g0222 Lele26g0234 Lele27g1863 Lele28g0243 . . . . Mibi08g2436 . Phac1g00900 Phco2g00755 Prci2g0356 Psa6g0925 . . . . . . Sto5g0338 . . . . . . . Vivi4g04618 Vra6g1421
Pvu1g0677 . . . Aed6g1002 . Ahy16g2845 . . . . Amo06g3121 . . Bach3g01819 . Bva10g00204 . Cca05g00678 . Dod08g1536 . . . . . Gso13g0201 . . . . . . . . . . . . Lja1g5790 . . . . . . Phco2g00757 . . Pste8g02025 Pumo9g00840 Rops9g01712 Seca4g00742 Spst8g01428 Ssu5g0715 . Tpr1g3177 . . . Vifa3g04157 Vimu1g02393 Viun8g00946 Vivi4g04765 Vra6g1420
Pvu1g0678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00759 . . . . . . . . . . . . . . . . . .
Pvu1g0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00760 . . . . . . . . . . . . . . Vimu1g02390 . . Vra6g1419
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0671 Chr1 8229620 8230075 -
Gso Gso17g1592 Chr17 24873066 24875527 +
Pvu Pvu1g0672 Chr1 8234705 8236152 +
Enph Enph7g0663 Chr7 12642655 12643920 -
Mal Mal1g5205 Chr1 124777281 124780786 -
Prci Prci2g1507 Chr2 11204810 11207507 +
Sto Sto5g1271 Chr5 8634788 8636053 +
Tsu Tsu01g00922 Chr01 8434208 8436673 +
Pvu Pvu1g0673 Chr1 8258937 8262787 +
Acco Acco05g2784 Chr05 43008994 43013409 +
Accr Accr3g00263 Chr3 2755626 2757559 -
Alju Alju07g2734 Chr07 52821481 52824149 +
Apr Apr9g0748 Chr9 13304670 13308795 -
Bisa Bisa05g0865 Chr05 14442899 14446104 -
Car Car04g02935 Chr04 56536332 56539091 +
Cca Cca05g00069 Chr05 1490646 1493780 -
Dere Dere05g2563 Chr05 36185643 36187832 +
Enph Enph7g1336 Chr7 18819668 18823193 +
Glsi Glsi10g1244 Chr10 8416386 8418263 +
Gma Gma14g01505 Chr14 35531304 35535942 +
Gso Gso14g1266 Chr14 33325751 33330351 +
Gso Gso13g0206 Chr13 11423294 11427599 +
Lasa Lasa6g00883 Chr6 34849421 34850692 -
Lele Lele26g0233 Chr26 1350060 1355688 -
Lele Lele28g0239 Chr28 1408494 1410614 -
Lja Lja1g5782 Chr1 102968946 102976609 -
Mibi Mibi08g2437 Chr08 42153036 42154855 +
Phac Phac1g00898 Chr1 7834503 7838469 -
Phco Phco2g00752 Chr2 8071572 8075087 -
Prci Prci2g0354 Chr2 2526031 2528788 -
Psa Psa6g0919 Chr6 34530457 34531634 -
Pste Pste8g02030 Chr8 16466379 16481861 +
Pumo Pumo9g01102 Chr9 31330624 31335070 -
Rops Rops9g02462 Chr9 45737791 45741675 -
Seca Seca8g02546 Chr8 57395652 57399519 +
Spst Spst8g01433 Chr8 13539349 13540242 +
Sto Sto5g0337 Chr5 2012266 2014079 -
Tpr Tpr1g3079 Chr1 35309018 35312085 +
Vimu Vimu1g02397 Chr1 34701175 34703451 +
Viun Viun8g00986 Chr8 11049402 11053745 -
Vivi Vivi4g04620 Chr4 174180230 174181910 +
Vra Vra6g1423 Chr6 28052224 28055767 +
Pvu Pvu1g0674 Chr1 8292901 8301322 +
Apr Apr9g0749 Chr9 13316734 13321644 -
Car Car04g02934 Chr04 56517008 56525158 +
Cca Cca05g00070 Chr05 1508573 1514375 -
Gso Gso13g0205 Chr13 11380083 11391833 +
Lja Lja1g5783 Chr1 102994421 103002800 -
Pste Pste8g02029 Chr8 16456560 16462033 +
Pumo Pumo9g01103 Chr9 31355203 31360163 -
Rops Rops9g02463 Chr9 45784776 45793039 -
Seca Seca8g02540 Chr8 56891454 56896928 +
Spst Spst8g01432 Chr8 13524647 13530167 +
Tpr Tpr1g3078 Chr1 35281022 35289238 +
Vifa Vifa3g04078 Chr3 1201096534 1201098315 +
Vimu Vimu1g02394 Chr1 34651945 34660261 -
Viun Viun8g00992 Chr8 11147982 11157887 +
Vivi Vivi4g04619 Chr4 174160936 174167730 +
Pvu Pvu1g0675 Chr1 8306524 8306581 +
Pvu Pvu1g0676 Chr1 8308191 8309121 +
Acco Acco05g2783 Chr05 42993823 42997523 +
Accr Accr3g00265 Chr3 2786167 2789209 -
Alju Alju07g2733 Chr07 52802273 52806746 +
Bisa Bisa05g0866 Chr05 14459401 14465888 -
Dere Dere05g2562 Chr05 36169220 36173398 +
Enph Enph7g1334 Chr7 18810625 18814732 +
Glsi Glsi10g1242 Chr10 8404845 8408543 +
Gma Gma14g01485 Chr14 32064141 32068881 +
Gso Gso14g1251 Chr14 30622739 30632721 +
Lasa Lasa6g00884 Chr6 34897439 34901809 -
Lele Lele25g0222 Chr25 1313971 1317612 -
Lele Lele26g0234 Chr26 1357035 1359297 -
Lele Lele27g1863 Chr27 23424155 23426549 +
Lele Lele28g0243 Chr28 1415205 1417468 -
Mibi Mibi08g2436 Chr08 42137514 42141444 +
Phac Phac1g00900 Chr1 7872555 7890328 +
Phco Phco2g00755 Chr2 8107540 8117399 +
Prci Prci2g0356 Chr2 2548651 2554510 -
Psa Psa6g0925 Chr6 34796028 34801862 -
Sto Sto5g0338 Chr5 2022007 2025335 -
Vivi Vivi4g04618 Chr4 174160608 174167730 +
Vra Vra6g1421 Chr6 28014878 28019972 -
Pvu Pvu1g0677 Chr1 8328312 8333914 +
Aed Aed6g1002 Chr6 13679718 13688980 -
Ahy Ahy16g2845 Chr16 142277321 142284400 -
Amo Amo06g3121 Chr06 98324835 98331899 +
Bach Bach3g01819 Chr3 26508193 26514323 -
Bva Bva10g00204 Chr10 3331925 3338427 -
Cca Cca05g00678 Chr05 17243824 17261383 -
Dod Dod08g1536 Chr08 34776831 34787224 -
Gso Gso13g0201 Chr13 11160725 11168839 -
Lja Lja1g5790 Chr1 103367406 103376809 +
Phco Phco2g00757 Chr2 8143718 8153146 +
Pste Pste8g02025 Chr8 16357023 16363572 -
Pumo Pumo9g00840 Chr9 18032471 18032782 +
Rops Rops9g01712 Chr9 30052993 30061062 -
Seca Seca4g00742 Chr4 12515886 12524500 -
Spst Spst8g01428 Chr8 13427154 13433355 -
Ssu Ssu5g0715 Chr5 17664958 17677977 +
Tpr Tpr1g3177 Chr1 36241310 36249475 +
Vifa Vifa3g04157 Chr3 1224802149 1224810137 -
Vimu Vimu1g02393 Chr1 34639396 34650372 -
Viun Viun8g00946 Chr8 10016482 10026936 +
Vivi Vivi4g04765 Chr4 176885511 176893553 -
Vra Vra6g1420 Chr6 28002714 28010171 -
Pvu Pvu1g0678 Chr1 8336859 8338415 +
Pvu Pvu1g0679 Chr1 8375457 8375837 -
Phco Phco2g00759 Chr2 8172156 8172536 -
Pvu Pvu1g0680 Chr1 8381806 8385990 -
Phco Phco2g00760 Chr2 8182304 8186039 -
Vimu Vimu1g02390 Chr1 34581566 34583029 -
Vra Vra6g1419 Chr6 27969394 27972320 -
Seca Seca4g00742 Chr4 12515886 12524500 -
Vivi Vivi4g04620 Chr4 174180230 174181910 +