Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr3g00263 | ATGGTTGGAAGGGAGAAGTTGAGGACGGAGGACTTGAACTCGTGCTTTGAGAAGCTGATGATGGTTGCCGGCGGCGAGAAAGGTGGCAAAGGAGTGAAAATGGAGGGTGGGCCGAATTCAGAATGGAAAGATATTCCAGTGGAACTTTTGATGCAAATACTGGGCCTTGTGGATGATCAGACGGTGATCGCAGCTTCTGGTGTATGTCGTGGGTGGAGAGAAGCTATTTGCTTTGGCCTTACCCGTTTGTCCCTCTCATGGTGCAGCAAGAATATGAATAATTTGGTGCTATTTCTTGCTCCGAAGTTCACAAAATTGCAAACTCTAGTCCTTCGTCAAGAGAAGCCTCAGCTAGAGGATACTGCTGTTGAGACCATTGCAAATTGCTGTCATGACCTGCAGATCCTGGACCTGAGCAAAAGTTTCAAGCTGACCGATCATTCGCTGTATTCCTTAGCTCGTGGTTGCCCTGATCTCATAAAACTGAATATCAGTGGGTGTTCAGCATTTAGTGACACTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAATTGAGAGTCCTAAATCTCTGTGGATGTGTGAAAGCTGCATCTGACACCGCATTGCAGGCAATTGGACGCTGCTGCAACGAGTTGCAGTCTCTGAACCTAGGATGGTGCGAAAATGTGGGTGATGTTGGAGTGGTGAGTTTAGCCCACGGGTGCCCCGATCTTAGGACACTGGACCTGTGTGGTTGTATCTGTATAACAGATGATAGTGTGGTTGCACTGGCAACCAGTTGTCCTTATCTGAGGTCTCTGGGGCTGTACTACTGCCAAAACATCACAGACAGGTCGATGCATTCGTTGGCAGAGAGCAAAGTGAAGCACAGGGCGTGGGGATCAGTGAAAGGAGGGAACGAGGAGGATGGGCTGAGGACTCTGAACATAAGCCAGTGCACAGCACTCACACCCTCCGCGGTTCAGGCGGTGTGCAACTCCTTCCCGGCTCTGCACACATGCTCCGGCAGGCACTCCCTCATCACGAGTGGCTGTCTCAGCTTGACATCCGTGCACTGTGCCTGTGCCTTTGCCGGCCATCCACCACACAAAGGGTAA | 1098 | 0.5073 | MVGREKLRTEDLNSCFEKLMMVAGGEKGGKGVKMEGGPNSEWKDIPVELLMQILGLVDDQTVIAASGVCRGWREAICFGLTRLSLSWCSKNMNNLVLFLAPKFTKLQTLVLRQEKPQLEDTAVETIANCCHDLQILDLSKSFKLTDHSLYSLARGCPDLIKLNISGCSAFSDTALAYLASFCRKLRVLNLCGCVKAASDTALQAIGRCCNELQSLNLGWCENVGDVGVVSLAHGCPDLRTLDLCGCICITDDSVVALATSCPYLRSLGLYYCQNITDRSMHSLAESKVKHRAWGSVKGGNEEDGLRTLNISQCTALTPSAVQAVCNSFPALHTCSGRHSLITSGCLSLTSVHCACAFAGHPPHKG | 365 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 261 | 286 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 182 | 208 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 130 | 155 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 77 | 102 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 302 | 327 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 156 | 181 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 235 | 260 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 209 | 234 | IPR006553 | - | |
| Accr3g00263 | 365 | SMART | LRR_CC_2 | 103 | 129 | IPR006553 | - | |
| Accr3g00263 | 365 | PANTHER | UNCHARACTERIZED | 77 | 335 | - | - | |
| Accr3g00263 | 365 | SUPERFAMILY | F-box domain | 30 | 77 | IPR036047 | GO:0005515 | |
| Accr3g00263 | 365 | CDD | F-box_AtSKP2-like | 41 | 88 | - | - | |
| Accr3g00263 | 365 | Pfam | Leucine Rich repeat | 210 | 232 | IPR001611 | GO:0005515 | |
| Accr3g00263 | 365 | Pfam | F-box domain | 42 | 77 | IPR001810 | GO:0005515 | |
| Accr3g00263 | 365 | SUPERFAMILY | RNI-like | 76 | 284 | - | - | |
| Accr3g00263 | 365 | Gene3D | - | 41 | 74 | - | - | |
| Accr3g00263 | 365 | Gene3D | Ribonuclease Inhibitor | 75 | 292 | IPR032675 | - | |
| Accr3g00263 | 365 | FunFam | F-box protein SKP2B | 77 | 295 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr3g00263 | Accr-Chr3 | 2755626 | 2757559 | Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr3g00263 | K03875 | - | gmx:100818928 | 605.134 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Accr3g00263 | 3 | 2755626 | 2757559 | Accr4g00303 | 4 | 2948813 | 2951386 | CCT | |
| Accr3g00263 | 3 | 2755626 | 2757559 | Accr3g00263 | 3 | 2755626 | 2757559 | ECH |