Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0239 ATGGTGGGAAAGGAGAACCTGAGGAACGAGGACTTGAACTTGTGCTTTGAGAAGCTGATGATGGTTGCCGGAGGCGAAAAAGGTGGTAAAGAAGTGAAAATGGAGGGTGTGGCAGCGAATTCAGAATGGAAAGATATTCCTGTGGAACTTTTGATGCAAATATTGGGTCTTGTGGATGATCAGACGATGATCGCAGCTTCTGGTGTCTGTCGTGGGTGGAGAGAAGCTATTTGCTTTGGCCTTACCCGTTTATCACTCTCATGGTGCAACAAGAACATGAATAATTTGGTCCTATTTCTTGCTCCCAAATTCACAAAATTGCAAACTCTCATCCTACGTCAAGCTAAGCCTCAGCTGGAGGATATCGCCGTTGAGACCATTGCAAATTGCTGTCATGACCTGCAGGTCCTGGACCTGAGCAAAAGTTTCAAGCTGACCGATCGTTCACTGTATGCCTTGGCCCATGGTTGCCCTAATCTCACAAAACTGAATATCAGTGGGTGTTCAGCATTTAGTGACACCGCTCTGGCATACCTGGCCAGTTTCTGCAGAAAATTGAGAGGCTTAAATCTCTGTGGATGTGTGAAAGCAGCATCCGACACCGCATTGCAGGCAATTGGACGCTATTGCAATGAGTTGCAGTGTTTGAACCTGGGATGGTGCGAAGATGTTGGTGATGTTGGCGTGATGAGCTTAGCTCACGGGTGCCCTGATCTCAGAACACTGGACTTGTGTGGTTGTATCTGTATAACAGATGATAGTGTGATTGCATTGGCAAACGGGTGCCCTCATCTGAGGTCACTGGGGCTGTACTACTGCCAAAACATCACAGACAAGTCAATGCATTCGTTGGCTCAGAGCAAAGTCAATATGAAAGGAGGAAACGAGGAGGATGGGCTGAGGACTCTGAACATAAGCCAATGCACAGCGCTCACACCCTCGGCGGTTCAGGCAGTGTGTGACTCCTTCCCGGCTCTGCACACATGCTCCGGCCGGCACTCCCTCATCATGAGTGGCTGTCTCAACTTGACGTCCGTCCACTGTGCCTGTGCCGGCCACGCTCATCGTGTTCTCGCCGCTTTTCCTCATCCAGCACACTGA 1101 0.4959 MVGKENLRNEDLNLCFEKLMMVAGGEKGGKEVKMEGVAANSEWKDIPVELLMQILGLVDDQTMIAASGVCRGWREAICFGLTRLSLSWCNKNMNNLVLFLAPKFTKLQTLILRQAKPQLEDIAVETIANCCHDLQVLDLSKSFKLTDRSLYALAHGCPNLTKLNISGCSAFSDTALAYLASFCRKLRGLNLCGCVKAASDTALQAIGRYCNELQCLNLGWCEDVGDVGVMSLAHGCPDLRTLDLCGCICITDDSVIALANGCPHLRSLGLYYCQNITDKSMHSLAQSKVNMKGGNEEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAGHAHRVLAAFPHPAH 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0239 366 Gene3D Ribonuclease Inhibitor 79 296 IPR032675 -
Lele28g0239 366 SUPERFAMILY RNI-like 77 347 - -
Lele28g0239 366 FunFam F-box protein SKP2B 78 298 - -
Lele28g0239 366 Gene3D - 38 78 - -
Lele28g0239 366 PANTHER UNCHARACTERIZED 224 349 - -
Lele28g0239 366 Pfam F-box-like 44 77 IPR001810 GO:0005515
Lele28g0239 366 SUPERFAMILY F-box domain 34 78 IPR036047 GO:0005515
Lele28g0239 366 SMART LRR_CC_2 78 103 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 297 322 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 210 235 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 262 287 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 157 182 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 236 261 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 104 130 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 183 209 IPR006553 -
Lele28g0239 366 SMART LRR_CC_2 131 156 IPR006553 -
Lele28g0239 366 Pfam Leucine Rich repeat 262 285 IPR001611 GO:0005515
Lele28g0239 366 Pfam Leucine Rich repeat 210 233 IPR001611 GO:0005515
Lele28g0239 366 Pfam Leucine Rich repeat 157 179 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0239 Lele-ChrLele28 1408494 1410614 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0239 28 1408494 1410614 Lele01g0254 01 1443459 1449802 CCT
Lele28g0239 28 1408494 1410614 Lele02g0245 02 1396053 1399266 CCT
Lele28g0239 28 1408494 1410614 Lele03g0260 03 1427040 1432743 CCT
Lele28g0239 28 1408494 1410614 Lele04g0251 04 1497699 1500763 CCT
Lele26g0233 26 1350060 1355688 Lele28g0239 28 1408494 1410614 hybridization