Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0243 ATGGCTACCGTATGTCGGCCATATTTTGATCCTGAGTATGAGAATTTCAGCAATAGAATCAATCCTCCAAGGGTCTCTGTGGACAATGCTACTTGTCATGATTGTACCCTGATCAAGGTAGATAGTGTTAACAAACCGGGAATTCTGCTGGAGGTTGTACAAATTCTCACTGACCTTGACCTCATAATCACCAAAGCTTACATATCTTCTGACGGTGGATGGTTCATGGATGTATTTCATGTCACGGATCAGCAAGGAAAGAAGATAACAGACAGCAAAACCATTGATTTCATAGAGAAGGCTCTAGGACCCAAGGGCCAGAGCAACGAGGGGCCGAAGAGTTGGCCGGGCAAACGGGTCGGCGTGCATTCGATTGGTGATCATACTGCCATTGAGCTCATCGGCAGAGACCGACCAGGTCTTTTATCTGAGATCTCGGCTGTAATTGCCAGCCTCCACATTAACGTGGTTGCAGCTGAGGTTTGGACTCATAATAGGAGAATAGCATGTGTTCTTTATGTGAATGATGCTCCCAGACGATCAGGGGACGCTCCTAACAGATTATCTCTCATGGAGGAGCAGCTCAACCATATCCTACGTGGATGTGAGGATGATGACAAAGTAGCTCGCACCAGTTTCTCCATGGGTTTCACCCATATGGATCGGCGGCTCCACCAAATGTTGTTTGCCGATCGTGACTACGAATGTGCTGTGGTGGCAGCAGATGTTAGTTGTCCTCCCTCCTTCAGGCCACAAATCAAAATAGAGCATTGCGAGGAGAAAGGGTACTCAATTGTTAGTGTCAGGTGCAAAGATCGAGCCAAACTGATGTTTGACATCGTTTGCACTCTCACCGACATGCAATATGTTGTTTTCCATGCCACAATTTCATCAGATGCCCCTTACGCGTCCCAGGAGTACTTTATCCGGCACATGGATGGATGCACACTTGATACTGAAGGAGAGAAAGAAAGGGTCATCAAGTGTATTGAAGCTGCTATTCAAAGAAGAGTAAGTGAGGGAGTGAGCCTGGAGCTGTGCGCAAAGGATAGAGTGGGCTTGCTATCAGAAGTGACGAGGATTCTGAGGGAGAATGGGCTGACGGTGTGCAGAGCAGGGGTGTCAACGGTAGGGGAGAAAGCGATGAACGTGTTTTATGTGAGAGATGCTTCAGGGAATCCAGTGGACACGAAAGCCATAGAAGCCCTTCGGAAGGAGATAGGAGAAAGCATGATGATCAACGTGAAGAAGATACCGGGAGGCAATGCCAAAGCGGCCGAGAACGACCGAGGATGGGCTAAAACTGGCTTCTTCTTTGGCAATTGGCTCGAAAGGTTCTTGAATTGA 1347 0.4788 MATVCRPYFDPEYENFSNRINPPRVSVDNATCHDCTLIKVDSVNKPGILLEVVQILTDLDLIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKGQSNEGPKSWPGKRVGVHSIGDHTAIELIGRDRPGLLSEISAVIASLHINVVAAEVWTHNRRIACVLYVNDAPRRSGDAPNRLSLMEEQLNHILRGCEDDDKVARTSFSMGFTHMDRRLHQMLFADRDYECAVVAADVSCPPSFRPQIKIEHCEEKGYSIVSVRCKDRAKLMFDIVCTLTDMQYVVFHATISSDAPYASQEYFIRHMDGCTLDTEGEKERVIKCIEAAIQRRVSEGVSLELCAKDRVGLLSEVTRILRENGLTVCRAGVSTVGEKAMNVFYVRDASGNPVDTKAIEALRKEIGESMMINVKKIPGGNAKAAENDRGWAKTGFFFGNWLERFLN 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0243 448 CDD ACT_ACR_4 341 412 - -
Lele28g0243 448 Pfam ACT domain 37 85 IPR002912 -
Lele28g0243 448 Pfam ACT domain 130 168 IPR002912 -
Lele28g0243 448 Pfam ACT domain 343 403 IPR002912 -
Lele28g0243 448 FunFam ACT domain repeat 6 341 418 - -
Lele28g0243 448 SUPERFAMILY ACT-like 339 408 IPR045865 -
Lele28g0243 448 ProSiteProfiles ACT domain profile. 37 116 IPR002912 -
Lele28g0243 448 CDD ACT_ACR_1 35 106 - -
Lele28g0243 448 Gene3D - 338 417 - -
Lele28g0243 448 CDD ACT_ACR_3 263 337 - -
Lele28g0243 448 ProSiteProfiles ACT domain profile. 343 420 IPR002912 -
Lele28g0243 448 ProSiteProfiles ACT domain profile. 130 213 IPR002912 -
Lele28g0243 448 SUPERFAMILY ACT-like 125 200 IPR045865 -
Lele28g0243 448 Gene3D - 128 208 - -
Lele28g0243 448 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 5 416 IPR040217 -
Lele28g0243 448 SUPERFAMILY ACT-like 32 105 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0243 Lele-ChrLele28 1415205 1417468 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0243 28 1415205 1417468 Lele01g0260 01 1479284 1483570 CCT
Lele28g0243 28 1415205 1417468 Lele02g0249 02 1411265 1414463 CCT
Lele28g0243 28 1415205 1417468 Lele03g0266 03 1457959 1462754 CCT
Lele28g0243 28 1415205 1417468 Lele04g0257 04 1521700 1524922 CCT
Lele25g0222 25 1313971 1317612 Lele28g0243 28 1415205 1417468 hybridization
Lele26g0234 26 1357035 1359297 Lele28g0243 28 1415205 1417468 hybridization