Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1423 ATGGAAATGGTTGGCAAGGAGGGTTTGAGAACTGGGGTGTTGAACTTGAGTTTTGGGAAGCTTATGATGGTTGGTGGTGGTGAAAATAGTGGGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACTGATTGGAAAGATATTCCAGTGGAGCTTTTGATGCAAATTTTGTCACTTGTTGATGATCAAACGGTGATCATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACCCGGTTGTCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCCCTTACTCCTAAATTTACAAAACTGCAAACTTTAATCCTTCGTCAAGACAAACCTCAACTAGAGGACAATGCTGTTGCGTCTATTGCAAATTTCTGTCATGACCTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTCACAGATCGTTCATTATATGCCATAGCCCTAGGTTGTTGGCATCTTACAAAACTGAACATTAGTGGTTGTTCAGCCTTTAGTGACAGTGCTCTGGCTTACCTAGCAAGTTTATGCAGAGAGCTGAAAGTATTGAATCTATGTGGATGTGTTAAAGCTGCATCCGACACTGCACTACAGGCAATTGGACGTTACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGAAAATGTCAGTGATGTTGGAGTAACGAGTTTAGCTTATGGCTGCCCTGATCTTCGAACACTTGACTTGTGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGATGTCCTCATCTTAGGTCCCTTGGACTGTACTATTGCCAAAACATAACAGACAGAGCAATGTATTCTTTGGCACAAAGCAAAGTGAAGAATAGAATGTGGGGATCTGTGAAAGGTGGAAATGATGAAGATGGATTAAGGACTTTGAACATCAGCCAATGCACAGCACTCACCCCTTCTGCTGTTCAGGCTGTGTGTGACTCATCCCCTGCACTCCACACCTGTTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTCAGTCTGACATCTGTGCACTGTGCATGTGCTGTCCAAGCACACCGTGGTATCAGCACCATTCCTAATACAGCACATTGA 1122 0.4385 MEMVGKEGLRTGVLNLSFGKLMMVGGGENSGKGVNLKAGVITDWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLTPKFTKLQTLILRQDKPQLEDNAVASIANFCHDLQILDLSKSFKLTDRSLYAIALGCWHLTKLNISGCSAFSDSALAYLASLCRELKVLNLCGCVKAASDTALQAIGRYCNQLQSLNLGWCENVSDVGVTSLAYGCPDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYYCQNITDRAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLSLTSVHCACAVQAHRGISTIPNTAH* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1423 373 SMART LRR_CC_2 211 236 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 237 262 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 263 288 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 79 104 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 105 131 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 132 157 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 184 210 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 158 183 IPR006553 -
Vra6g1423 373 SMART LRR_CC_2 304 329 IPR006553 -
Vra6g1423 373 PANTHER F-BOX SKP2A-LIKE PROTEIN 3 355 - -
Vra6g1423 373 Pfam Leucine Rich repeat 263 286 IPR001611 GO:0005515
Vra6g1423 373 Pfam Leucine Rich repeat 211 234 IPR001611 GO:0005515
Vra6g1423 373 Pfam Leucine Rich repeat 237 260 IPR001611 GO:0005515
Vra6g1423 373 SUPERFAMILY RNI-like 71 287 - -
Vra6g1423 373 SUPERFAMILY F-box domain 41 79 IPR036047 GO:0005515
Vra6g1423 373 Pfam F-box-like 45 78 IPR001810 GO:0005515
Vra6g1423 373 Gene3D Ribonuclease Inhibitor 80 294 IPR032675 -
Vra6g1423 373 Gene3D - 40 79 - -
Vra6g1423 373 PANTHER UNCHARACTERIZED 3 355 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1423 K03875 - gmx:100793275 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1423 6 28052224 28055767 Vra6g1423 6 28052224 28055767 ECH