Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00742 ATGGTGAACCCGTTGGTTGAACGTGCCACCAGCGACATGCTTATCGGCCCTGACTGGGCTTTGAACATTGAGATCTGTGACATACTCAATCGTGACCCTGGGCAAACAAAAGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAAATTCTAAAGCTCAACTTCTTGCACTAACTCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCAGAGAGAAATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTCTCTTGTCAGAGAGAAGATACTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGCCAAGGGGAAGATATCCACAGTATTTTGCTGCATACCAGGAACTATTGCATTCTGGGGCAGTATTTCCTCAGAGGTCTGAGAAATCTGCACCTGTGTTCACACCGCTACAAACACAACCATTAACATCATACCCTCAAAACATACGAGACTCTGATGCTCAGCAACACACAGCTGAGTCCTCAGCAGAGTCTGAGTTTCCAACCCTAAGTTTGACTGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCTTTAGAGCCTGGTAACAAAGAAGGGCTTCGACAGGAAGTTATTGTTGATTTGGTGGAGCAATGTCGAGCATACAAGCAAAGAGTGGTACACCTTGTTAATTCAACTTCGGACGAGTCACTGCTATGCCAAGGACTAGCTCTAAATGATGATCTGCAGCGTGTATTGTCCAAGCATGAATCCATTGCTTCAGGAACTTCTGTTCAAAACCATACCGAGAAACCGAATCCTGCACCTACTAGAGCACTTGTAGATGTTGATGGTCCTTTGGTTGATACTGGAGATACTAGTAAACAAACTGATGGGAGATCATCTTCTAGTGCTGAAGCAGGGTCTCAAACTTTGAATCAGTTATTGCTTCCTGCACCCCCTACATCAAATGGTTCAGCTCCCCTTGCAAAGGTTGATCCTAAATTGGACCTCCTCAGTGGTGACGATTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTGTAGGGGAACAGCAGCCAGCCAGTCCTATATCTCAGCAGAATGCCCTTGTTCTTTTTGATGTGTTTTCTAATGGAAGCAATACACCGACTTCGATTAATACCCAGCCAACTAATGTTGCTGTTCAAGCCAGTCCATTAGCCCCGCAATTTCAACAACAGCAAACTTTCATGTCTCAAAATGCATTTTACCCAAATGGAAGTATGCAAAATGTGGGGTCACCTCGGTATGAGCAATCACCATATGCGCAAAGCACAGGTCCTGCTTGGAATGGTCAGGCTGCACAGCATCAACAACCATCTTCACCAGTTTATGGTGCACTTAATGCTTCTTTTATTAGATTTAATTCCTGTTTAGCTCAAATCCTTTCGTAA 1464 0.4331 MVNPLVERATSDMLIGPDWALNIEICDILNRDPGQTKDVVKGIKKRIGSKNSKAQLLALTLLETIIKNCGDIVHMHVAERNVLHEMVKIVKKKPDSLVREKILILIDTWQEAFGGPRGRYPQYFAAYQELLHSGAVFPQRSEKSAPVFTPLQTQPLTSYPQNIRDSDAQQHTAESSAESEFPTLSLTEIQNARGIMDVLAEMLNALEPGNKEGLRQEVIVDLVEQCRAYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLSKHESIASGTSVQNHTEKPNPAPTRALVDVDGPLVDTGDTSKQTDGRSSSSAEAGSQTLNQLLLPAPPTSNGSAPLAKVDPKLDLLSGDDYNSPKAETSLALVPVGEQQPASPISQQNALVLFDVFSNGSNTPTSINTQPTNVAVQASPLAPQFQQQQTFMSQNAFYPNGSMQNVGSPRYEQSPYAQSTGPAWNGQAAQHQQPSSPVYGALNASFIRFNSCLAQILS. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00742 487 Gene3D - 183 275 IPR038425 -
Seca4g00742 487 FunFam TOM1-like protein 2 182 272 - -
Seca4g00742 487 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Seca4g00742 487 CDD GAT_GGA-like_plant 188 266 - -
Seca4g00742 487 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Seca4g00742 487 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Seca4g00742 487 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Seca4g00742 487 SUPERFAMILY GAT-like domain 141 269 - -
Seca4g00742 487 PANTHER TOM1-LIKE PROTEIN 1 464 IPR044836 GO:0035091|GO:0043130|GO:0043328
Seca4g00742 487 FunFam TOM1-like protein 2 1 148 - -
Seca4g00742 487 CDD VHS 2 130 - -
Seca4g00742 487 MobiDBLite consensus disorder prediction 436 464 - -
Seca4g00742 487 Gene3D - 1 148 IPR008942 -
Seca4g00742 487 MobiDBLite consensus disorder prediction 267 315 - -
Seca4g00742 487 MobiDBLite consensus disorder prediction 158 181 - -
Seca4g00742 487 MobiDBLite consensus disorder prediction 297 315 - -
Seca4g00742 487 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Seca4g00742 487 Pfam VHS domain 4 113 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00742 Seca-Chr4 12515886 12524500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00742 - - gmx:100805762 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00742 4 12515886 12524500 Seca4g00742 4 12515886 12524500 ECH
Seca4g00742 4 12515886 12524500 Seca4g02421 4 41383558 41389162 PCT