Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00069 ATGATGGTTGGTGGTTGTGGAGATATTTGTGTGAAAGGAGTGAACTTGAAAGCTGGGGTGATCACAGAGTGGAAGGATATTCCAGTGGAGCTTTTGATGCAGATTTTGTCACTTGTGGATGACCAAACCGTGATCATAGCTTCTGAAGTTTGTCGTGGGTGGAGAGAGGCAATTTGCTTTGGCCTTACTCGGTTATCACTGTCATGGTGTAGCAAGAACATGAATAACCTGGTCCTATCCCTTGCTCCTAAATTCACAAAATTGCAGACTTTAATCCTTCGACAAGATAAGCCTCAACTAGAGGACAATGCTGTTGAGACTATTGCAAATTTCTGTCATGACCTGCAAATCCTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGTTCATTGTATGCTGTAGCCCTTGGCTGCCGTGATCTTACAAAACTGAACATCAGTGGTTGTTCAGCCTTTAGTGACAGTGCCCTGGCTTACCTTGCCAGCTTCTGCCGAAAGCTGAAAGTTTTGAATCTCTGTGGATGTGTTAAAGCTGCATCTGATACTGCTCTACAGGCTATTGGACACTATTGCAATCAGTTACAGTTTTTGAACCTTGGATGGTGTGAAAATGTCAGTGATGTTGGAGTGATGAGTTTAGCATATGGCTGCCCTGATCTTAGAACACTTGACTTATGTGGTTGTGTCCTTATAACAGATGACAGTGTAATTGCCTTGGCAAACAGGTGTCCTCATCTGAGGTCCCTTGGGCTGTACTACTGCCAAAACATCACAGACAGAGCAATGTATTCTTTGGCACAAAGCAAAGTGAAGAATAGGATGTGGGGGTCTGTGAATGGTGGAAATGATGAGGATGGACTAAGGACTTTGAACATTAGCCAATGTACAGCCCTCACCCCTTCTGCAGTGCAGGCTGTGTGTGACTCATCCCCTGCTCTCCACACCTGCTCTGGAAGACACTCACTCATCATGAGTGGTTGTCTGAATCTTACTTCTGTGCATTGTGCATGTGCTGTCCAAGCACACCGTGCTATTGGCACTCTCTCCAACATTGCTCATTGA 1062 0.4501 MMVGGCGDICVKGVNLKAGVITEWKDIPVELLMQILSLVDDQTVIIASEVCRGWREAICFGLTRLSLSWCSKNMNNLVLSLAPKFTKLQTLILRQDKPQLEDNAVETIANFCHDLQILDLSKSFKLTDRSLYAVALGCRDLTKLNISGCSAFSDSALAYLASFCRKLKVLNLCGCVKAASDTALQAIGHYCNQLQFLNLGWCENVSDVGVMSLAYGCPDLRTLDLCGCVLITDDSVIALANRCPHLRSLGLYYCQNITDRAMYSLAQSKVKNRMWGSVNGGNDEDGLRTLNISQCTALTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAVQAHRAIGTLSNIAH 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00069 353 PANTHER UNCHARACTERIZED 1 335 - -
Cca05g00069 353 Pfam Leucine Rich repeat 243 266 IPR001611 GO:0005515
Cca05g00069 353 Pfam Leucine Rich repeat 217 240 IPR001611 GO:0005515
Cca05g00069 353 Pfam Leucine Rich repeat 191 214 IPR001611 GO:0005515
Cca05g00069 353 Pfam F-box-like 25 58 IPR001810 GO:0005515
Cca05g00069 353 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 335 - -
Cca05g00069 353 SUPERFAMILY F-box domain 24 66 IPR036047 GO:0005515
Cca05g00069 353 Gene3D - 21 60 - -
Cca05g00069 353 SUPERFAMILY RNI-like 51 267 - -
Cca05g00069 353 SMART LRR_CC_2 138 163 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 85 111 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 243 268 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 191 216 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 284 309 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 217 242 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 59 84 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 164 190 IPR006553 -
Cca05g00069 353 SMART LRR_CC_2 112 137 IPR006553 -
Cca05g00069 353 Gene3D Ribonuclease Inhibitor 61 275 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00069 Cca-Chr5 1490646 1493780 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00069 K03875 - gmx:100793275 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00069 05 1490646 1493780 Cca05g00069 05 1490646 1493780 ECH
Cca05g00069 05 1490646 1493780 Cca03g01056 03 25647451 25650934 PCT