Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5790 ATGGCTAATGATGCAGCTGCCTGTGCTGAGAGGGCAACTAGTGATATGCTGATTGGTCCAGACTGGGCAATTAACTTAGAGTTGTGTGATATTATTAATAGGGACCCTGGGCAAACAAAGGATGCATTGAAGATTCTTAAGAAGAGTTTAAGCAGTAAAAATTCCCAAATGCAACTTCTGGCCCTTTTTGCACTGGAGACACTTAGTAAAAATTGCGGTGAAAGTGTCTTTCAGTATATCATTGAGCGGGATATCTTACATGACATGGTTAAGATAGTGAAGAACAAGCCGGCCTTCAATGTGAGGGAAAAGATACTGGATTTGATTGATACGTGGCAAGAAGCTCTTGGGGGACCAAATGGAAGGTATCCCCAGTACCACGCAGCATATCATGAATTAAAGTCTGCTGGAGTTGAATTTCCACCACGAGAAGCGAACAGTGTTCCTTTTTTCACTCCTCCTCAAACCCAACCAGTTGCTCATCTTGCTGGTGCAGAATATGATGATGCTGCTATCCCGGCTTCTATTCAGTCTGATACATCTGACCTTAGTTTACCAGAGATTCAGAATGCTCAAGGACTAGCGGATGTCTTGGCTGAAATGCTTAATGCCTTGGATCCTAAAAATCCAGAGGGTGTGAAGCAGGAAGTCATTGTTGACCTTGTTGACCAGTGCCATTCTTACCAAAAACGTGTTGTGCTTCTTGTGAATGCAACTACGGATGAACAGCTTTTATGTCAGGGATTGGCACTGAATGACAGCCTTCAGCGAGTACTTAGTCGACATGATGATATTGTAAAAGGAACTCCTGATACCGGGGCAAGAGGAACAGAAATGTCAGTTCTGCCACTTGTAAATGTAAACTATGAGTCGGATGAGTCGGATGATGATTTTGCCCAACTAGCCAACAGGTCATCACGAGATGGTCATGCACCAGACAGAAAACCAGAACCAGCGAGAGTAAACCCGATTCTTCCCCCGCCGCCAGCATCAAGGAAACCCATCTTGTCTAACTATGGTATGGTTGACTACCTCAGTGGTGATGCATACGAAACAGAGGTTTCCTATGACAACTCTGAGCCAACTCCATATGCAGTACCTCTTCATTCTGACCCCAATTCTTCCTCATCAACGACTGCAACACTGTCTTCCTCTCCACCTCCTTGTACCATGAATACCTCAACACCAGGTTTTAGCAAACAGCCTATATATGATGAACCATCTCCGGTCAACAAATCTTCAGAAAGCCTTTCTCCAGCTCCCGGGGACACGCAATCTCCAGGAATCCTTCCGCCTCCACCGGCAAGGTTTAATCAGAGGCAGAACTTTTTTGAGGAACAAGGCATGTCTCATTCAAGTAACTGGTCCAGTTCCTCGAATGACAGCTTGTTGGGACAAACTCAGAATCTGTCTCTGAATTCATCTACTCCAACCAAACAAGAGAAGCTAGAAGACGCCCTTTTCAAAGACCTACTTGACTTTGCAAAATCCAAAACCAAACCCAGTGGACCATTTTGA 1518 0.4473 MANDAAACAERATSDMLIGPDWAINLELCDIINRDPGQTKDALKILKKSLSSKNSQMQLLALFALETLSKNCGESVFQYIIERDILHDMVKIVKNKPAFNVREKILDLIDTWQEALGGPNGRYPQYHAAYHELKSAGVEFPPREANSVPFFTPPQTQPVAHLAGAEYDDAAIPASIQSDTSDLSLPEIQNAQGLADVLAEMLNALDPKNPEGVKQEVIVDLVDQCHSYQKRVVLLVNATTDEQLLCQGLALNDSLQRVLSRHDDIVKGTPDTGARGTEMSVLPLVNVNYESDESDDDFAQLANRSSRDGHAPDRKPEPARVNPILPPPPASRKPILSNYGMVDYLSGDAYETEVSYDNSEPTPYAVPLHSDPNSSSSTTATLSSSPPPCTMNTSTPGFSKQPIYDEPSPVNKSSESLSPAPGDTQSPGILPPPPARFNQRQNFFEEQGMSHSSNWSSSSNDSLLGQTQNLSLNSSTPTKQEKLEDALFKDLLDFAKSKTKPSGPF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5790 505 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Lja1g5790 505 PIRSF TOM1 1 504 IPR014645 -
Lja1g5790 505 Gene3D - 178 274 IPR038425 -
Lja1g5790 505 PANTHER TOM1-LIKE PROTEIN 4 1 500 - -
Lja1g5790 505 MobiDBLite consensus disorder prediction 303 317 - -
Lja1g5790 505 MobiDBLite consensus disorder prediction 368 423 - -
Lja1g5790 505 MobiDBLite consensus disorder prediction 353 479 - -
Lja1g5790 505 CDD VHS 10 135 - -
Lja1g5790 505 MobiDBLite consensus disorder prediction 319 333 - -
Lja1g5790 505 SUPERFAMILY GAT-like domain 145 268 - -
Lja1g5790 505 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
Lja1g5790 505 MobiDBLite consensus disorder prediction 303 336 - -
Lja1g5790 505 CDD GAT_GGA_like_plant 187 265 - -
Lja1g5790 505 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Lja1g5790 505 Gene3D - 3 141 IPR008942 -
Lja1g5790 505 PANTHER TOM1-LIKE PROTEIN 1 500 IPR044836 GO:0035091|GO:0043130|GO:0043328
Lja1g5790 505 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Lja1g5790 505 Pfam VHS domain 10 136 IPR002014 GO:0035091|GO:0043130
Lja1g5790 505 MobiDBLite consensus disorder prediction 440 479 - -
Lja1g5790 505 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5790 Lja-Chr1 103367406 103376809 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5790 - - gmx:100792343 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5790 1 103367406 103376809 Lja1g5790 1 103367406 103376809 ECH
Lja1g5790 1 103367406 103376809 Lja1g4960 1 69128004 69135692 PCT