Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0337 ATGGTGTGGACTGGGAGTGAAATGGTAGGTAAGGAGAAGTTGAAGAGTGAGGACTTGAACGTGTGCTTTGAGAAGCTTATGATGGCGGCTGGTGGTGGCGTTAATGGAAACAGTGGTAAAGGAGTTAAATTGGAGGGTGGGGTGATCTCAGAATGGAAGGATATTCCGGTAGAACTTTTGGTGCAAATTCTGACGCTTGTGGATGATCAGACGGTGATATCTGCTTCTGGTGTGTGTCGTGGGTGGAGAGATGCTATTTGCTTTGGCCTCACCCGCTTATCACTCTCATGGTGCAGAAAGAACATGAATAAGCTGGTGTTATCACTTGCTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGCCAATCCTCAGCTAGAGGATAATGCAGTGGAGAGTATTGCAAATTGGTGTGAGGGCCTGCAGATCCTAGACCTGAGCAAAAGTTTCAAGCTGAGTGATGGTTCACTGTATGCCTTAGCCCATGGTTGTCGTGATCTTAGAAAACTGAACATCAGTGGGTGTTCATCATTCAGTGACACTGCTCTGGCATACCTGGCCAGATTCTGCAGACATTTGAAAATCTTAAATCTGTGTGGATGTGTGAGAGCTGCATCGGACAGTGCATTGCAGGCAATTGGGCGTCACTGCAATGAACTGCAGTCATTGAACCTGGGGTGGTGTGAAAATGTTGGAGATGAAGGAGTGATGAGTTTAGCAGATGGGTGCCCTGATCTTAGAACAGTGGACTTGTGTGGGTGTGTGTGCATAACAGACGAAAGTGTGATAGCATTGGCAAAGAGGTGCCCCCATCTGAGGTCGCTTGGGCTGTACTACTGTCAAAACATAACGGACAGGGCAATGTACGCATTGGCAGAGAGCAAAGTGAATGGGCTGAGGACTCTCAATATCAGCCAATGCACAGCGCTCACGCCATCTGCGGTGCAGGCAGTGTGTGACTCATTCCCAGCACTCCACACATGCTCAGGCAGGCACTCCCTCATCATCAGTGGCTGTCTCAACCTTACATCAGTCCACTGTGCTTGTGCTGTTCACGCACACCCTCCGCCATTCCCCACTCTTCCTCATCTCAATCAAACACACTACGTATAG 1119 0.4835 MVWTGSEMVGKEKLKSEDLNVCFEKLMMAAGGGVNGNSGKGVKLEGGVISEWKDIPVELLVQILTLVDDQTVISASGVCRGWRDAICFGLTRLSLSWCRKNMNKLVLSLAPKFTKLQTLILRQANPQLEDNAVESIANWCEGLQILDLSKSFKLSDGSLYALAHGCRDLRKLNISGCSSFSDTALAYLARFCRHLKILNLCGCVRAASDSALQAIGRHCNELQSLNLGWCENVGDEGVMSLADGCPDLRTVDLCGCVCITDESVIALAKRCPHLRSLGLYYCQNITDRAMYALAESKVNGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIISGCLNLTSVHCACAVHAHPPPFPTLPHLNQTHYV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0337 372 PANTHER F-BOX SKP2A-LIKE PROTEIN 8 349 - -
Sto5g0337 372 Pfam Leucine Rich repeat 245 268 IPR001611 GO:0005515
Sto5g0337 372 Pfam Leucine Rich repeat 218 242 IPR001611 GO:0005515
Sto5g0337 372 Pfam Leucine Rich repeat 271 294 IPR001611 GO:0005515
Sto5g0337 372 SUPERFAMILY F-box domain 52 98 IPR036047 GO:0005515
Sto5g0337 372 Gene3D - 51 83 - -
Sto5g0337 372 PANTHER UNCHARACTERIZED 8 349 - -
Sto5g0337 372 Pfam F-box-like 53 86 IPR001810 GO:0005515
Sto5g0337 372 Gene3D Ribonuclease Inhibitor 84 354 IPR032675 -
Sto5g0337 372 SMART LRR_CC_2 140 165 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 166 191 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 192 218 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 245 270 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 219 244 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 113 139 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 298 323 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 271 296 IPR006553 -
Sto5g0337 372 SMART LRR_CC_2 87 112 IPR006553 -
Sto5g0337 372 SUPERFAMILY RNI-like 86 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0337 Sto-Chr5 2012266 2014079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0337 K03875 - gmx:100797840 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0337 5 2012266 2014079 Sto9g2823 9 29794235 29797842 CCT
Sto5g0337 5 2012266 2014079 Sto5g0337 5 2012266 2014079 ECH