Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0678 ATGGCGGAAGTGAAGTTTTTCTTCACAAATTTTCCTCACAAGTATGCGGAGAGGGACATGTGGAAGATTTTCCAGAGGTGGGAAAGGGTTGTTGACGTCTTTATCTCAAGAAGGCTAGACGCTGGAAATCGACGGTTCGGGTTTGTGAGATTTCAAGGGGTGATGGATGCACACGTCTTAGAGAGGATGCTAGATGCTATTTGGATAGGTTTGTGGAAGCTGCGGGTAAATCTACCTAAGTTTAGTAGGAAGGAAACACATAAACCAGAGTTGGGTGGTGAAAGGAAGAATGAACAGGCTAGGATGACTTGGAGGCAGAAGAATCCACCACGAACTTTTGCTCAGGTGGTCAGGGACGGCGACGAGTCTGCTTCTAAGAAGGCCATGGATAATAGTGTGGTTTGTTTTCAAGTTGCAGTGGAGTCTACCAAGTGGCTGGAGGAATGTTTCGTAGGGAGACTCATTGAGTTAAAAAACCTGAGGTCCTTAGGGAAGAAGTTTGTGCTGTTATCCTGTGATGAAGCGGGATTGTTAGAGGAGATAGTTGCTGGAAACAAAGATTTATTAGACGGAATTTTTAAGTCTATCGTTCCTTGGGATGATAGCTTTGCAGTTGGCAAAAAATTCGTTTGGGTCCGTTGCAGAGGTATTCCGTTGGCACTTTGGAGTAACCAGTGTTTCGAATCTGTTGGGTCTCTCGTTGGTGCGTTAGTAGAGGTTGACAATGTCACGGTAACTAGGGAGGTAGTAGAGTTTGCTCGGTTGCGCGTCAGAATCCCAGTAGGAAGTGACACAAGGATGGTAAAGCAAGTGCAGATCAATGGTACGTTTTGCAACGTTTCCTTTGAAGAAGAGAGTGAAGTTTCGTTAGCTATGCAACGACTTCTTGATCACCAATGGGGAATGGTTCGCGAGGAGGAGTCCGAAGCAAGTCTGGAAGAATGCGGAGAAGGTAGTTCAGTCAACTCATTGGAATCGGAGCTAGGTGAAGGGTTTGTTTCAAAGGAAGGAGAAGAGGAAACAATTCAGTTACCTGCGAAGGTGAAGGGAAGCATGTTAGGTGGTGATGGTGACGCATGGAAAAATATTTACTGCGGAAATTTTTTAGATACGTTAGGTGGAGTAGATTGCAATTCTAATTGCAATTCTAACTGTGGGGTAAATTTGTCCAACATGGGTAATTTTTCCAGCTTTGGAAACCCAACAGTTTTTTCTAAAAAGCTAGAGGAGAGTATTAAAGTGAGTGGGACCCAATCAGGTGGTTGTGCAGAAAAGCATCTTGGTCTTAATGGCACATTAATTGCTCAGGAGAAGGAATGGTCAGATGACCTAATCTGTGTTGGACCCATCTTGGCCCAAGAAAGACTTGTGAGTAGGGTTGGGAGTGCGCCGTCAGCGGCGACGGCGGCAGATGCCCTGTGCGTCGACGCAGGGGAGGTTGCGGGTGCGGAATCGACGAGAACAGCAGCAGCTTGCGGTGACTCCGGTGGCTGGCCGCTCGCCTGA 1506 0.4668 MAEVKFFFTNFPHKYAERDMWKIFQRWERVVDVFISRRLDAGNRRFGFVRFQGVMDAHVLERMLDAIWIGLWKLRVNLPKFSRKETHKPELGGERKNEQARMTWRQKNPPRTFAQVVRDGDESASKKAMDNSVVCFQVAVESTKWLEECFVGRLIELKNLRSLGKKFVLLSCDEAGLLEEIVAGNKDLLDGIFKSIVPWDDSFAVGKKFVWVRCRGIPLALWSNQCFESVGSLVGALVEVDNVTVTREVVEFARLRVRIPVGSDTRMVKQVQINGTFCNVSFEEESEVSLAMQRLLDHQWGMVREEESEASLEECGEGSSVNSLESELGEGFVSKEGEEETIQLPAKVKGSMLGGDGDAWKNIYCGNFLDTLGGVDCNSNCNSNCGVNLSNMGNFSSFGNPTVFSKKLEESIKVSGTQSGGCAEKHLGLNGTLIAQEKEWSDDLICVGPILAQERLVSRVGSAPSAATAADALCVDAGEVAGAESTRTAAACGDSGGWPLA* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0678 501 PANTHER RNA RECOGNITION MOTIF 5 332 - -
Pvu1g0678 501 SUPERFAMILY RNA-binding domain, RBD 6 293 IPR035979 GO:0003676
Pvu1g0678 501 Pfam Domain of unknown function (DUF4283) 160 257 IPR025558 -
Pvu1g0678 501 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Pvu1g0678 501 CDD RRM_SF 7 77 - -
Pvu1g0678 501 Gene3D - 2 90 IPR012677 -
Pvu1g0678 501 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 58 IPR000504 GO:0003723
Pvu1g0678 501 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 332 - -
Pvu1g0678 501 SMART rrm1_1 5 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0678 Pvu-Chr1 8336859 8338415 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0678 - - pvu:PHAVU_010G087400g 826.624