Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g2784 ATGGCCACTAAAACAGGAGTGAATCACGTCACTTACACGTGGCATGCAACGCGTTGCTTCCTCCCTCATCGCCGTACCTTTTTTCCTTCTTCTCTTCCCTATATTGTGGCCTTCTTTAGCTCCCTTCTTCCTCCTCCCACACTCTTCTCAATACAAGCCTCTCTTCTTACTTATTTGTCTCAGCTCAGAAACAAGGAAGTGACGAGATTGAAGGACGGTGTGGTTCGGATCGGGAATGAAATGGTGGGAAGGGAGAAGTTGAGGACGGAGGACTTGAACTCGTGCTTTGAGGAGCTGATGATGGTTGCCGGCGGCGAGAAAGGTGGCAAAGGAGTGAAAATGGAGGGTGGGCCGAATTCAGAATGGAAAGATATTCCAGTGGAACTTTTGATGCAAATACTGGGCCTTGTGGATCATCAGACAGTGATCGCAGCTTTTGGTGTATGTCGTGGGTGGAGAGAAGCTATTTGCTTTGGCCTTACTCGTTTATCACTCTCATGGTGCAGCAAGAACATGAATAATTTGGTGCTATTTCTTGCTCCTAAGTTCACAAAATTGCAAACTCTAATCCTTCGTCAAGAGAAGCCTCAGCTAGAAGATGCTGCTGTTGAGACCTTTGCAAATTGTTGTCATGACCTGCAGATCCTGGACCTGAGCAAAAGTTTCAGGCTGACCGATTGTTCGCTGTATTCCTTAGCCTGTGGTTGCCCTGATCTCAAAAAACTGAATATCAGTGGTTGTTCAGCATTTAGTGACATTGCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAATTGAGAGTCCTAAATCTCTGTGGATGTGTGAAAGCTGCATCTGACACCGCATTGCAGGCAATTGGACGCTACTGCAATGAGTTGCAGTCTTTGAACCTAGGATGGTGCGAAAATGTGGGCGATGTTGGAGTGATGAGTTTAGCCCACGGGTGCCCTGATCTTAGGACGCTGGACCTGTGTGGTTGTATCTTTATAACAGATGATAGTGTGGTTGCACTGGCAAACAGGTGCCCTCGCCTGACGTCTCTGGGACTGTACTACTGCCAAAACATCACAGACAGGTCGATGTATTCGTTGGCAGAGAGCAAAGTGAAGCACAGGGCGTGGGGATCAGTGAAAGGAGGAGGGAACGAGGAGGAAGGGCTGAGGACTCTGAACATAAGCCAGTGCACAGCACTCACACCCTCAGCGGTTCAGTCGGTGTGCGACTCCTTCCCGGCTCTGCACACATGCTCCGGCAGGCATTCCCTCATCACGAGTGGCTGTCTCAGCTTGACATCCGTGCACTGTGCCTGTGCCTGTGCCGGCCATCCACCAAACTAA 1335 0.4944 MATKTGVNHVTYTWHATRCFLPHRRTFFPSSLPYIVAFFSSLLPPPTLFSIQASLLTYLSQLRNKEVTRLKDGVVRIGNEMVGREKLRTEDLNSCFEELMMVAGGEKGGKGVKMEGGPNSEWKDIPVELLMQILGLVDHQTVIAAFGVCRGWREAICFGLTRLSLSWCSKNMNNLVLFLAPKFTKLQTLILRQEKPQLEDAAVETFANCCHDLQILDLSKSFRLTDCSLYSLACGCPDLKKLNISGCSAFSDIALAYLASFCRKLRVLNLCGCVKAASDTALQAIGRYCNELQSLNLGWCENVGDVGVMSLAHGCPDLRTLDLCGCIFITDDSVVALANRCPRLTSLGLYYCQNITDRSMYSLAESKVKHRAWGSVKGGGNEEEGLRTLNISQCTALTPSAVQSVCDSFPALHTCSGRHSLITSGCLSLTSVHCACACAGHPPN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g2784 444 Pfam Leucine Rich repeat 289 312 IPR001611 GO:0005515
Acco05g2784 444 SUPERFAMILY RNI-like 154 365 - -
Acco05g2784 444 Gene3D - 117 158 - -
Acco05g2784 444 SUPERFAMILY F-box domain 111 157 IPR036047 GO:0005515
Acco05g2784 444 Gene3D Ribonuclease Inhibitor 159 375 IPR032675 -
Acco05g2784 444 SMART LRR_CC_2 315 340 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 341 366 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 383 408 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 157 182 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 183 209 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 236 261 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 262 288 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 210 235 IPR006553 -
Acco05g2784 444 SMART LRR_CC_2 289 314 IPR006553 -
Acco05g2784 444 PANTHER UNCHARACTERIZED 137 416 - -
Acco05g2784 444 Pfam F-box domain 122 157 IPR001810 GO:0005515
Acco05g2784 444 CDD F-box_AtSKP2-like 121 168 - -
Acco05g2784 444 FunFam F-box protein SKP2B 157 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g2784 Acco-ChrAcco05 43008994 43013409 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco05g2784 05 43008994 43013409 Acco10g2469 10 36071428 36073941 CCT
Acco05g2784 05 43008994 43013409 Acco05g2784 05 43008994 43013409 ECH